Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01555 and HSERO_RS01560 are separated by 33 nucleotides HSERO_RS01560 and HSERO_RS01565 are separated by 99 nucleotides
HSERO_RS01555: HSERO_RS01555 - RND transporter, at 342,527 to 344,041
_RS01555
HSERO_RS01560: HSERO_RS01560 - transporter, at 344,075 to 347,290
_RS01560
HSERO_RS01565: HSERO_RS01565 - hemolysin secretion protein D, at 347,390 to 348,589
_RS01565
Position (kb) 344
345
346
347
348 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 343.380 kb on - strand, within HSERO_RS01555 at 343.422 kb on + strand at 343.440 kb on + strand, within HSERO_RS01555 at 343.467 kb on + strand, within HSERO_RS01555 at 343.472 kb on + strand, within HSERO_RS01555 at 343.477 kb on + strand, within HSERO_RS01555 at 343.565 kb on - strand, within HSERO_RS01555 at 343.705 kb on - strand, within HSERO_RS01555 at 343.742 kb on - strand, within HSERO_RS01555 at 343.776 kb on - strand, within HSERO_RS01555 at 343.834 kb on - strand, within HSERO_RS01555 at 343.845 kb on + strand, within HSERO_RS01555 at 343.942 kb on - strand at 344.178 kb on + strand at 344.212 kb on - strand at 344.246 kb on - strand at 344.316 kb on + strand at 344.347 kb on - strand at 344.478 kb on - strand, within HSERO_RS01560 at 344.485 kb on + strand, within HSERO_RS01560 at 344.526 kb on - strand, within HSERO_RS01560 at 344.625 kb on + strand, within HSERO_RS01560 at 344.678 kb on + strand, within HSERO_RS01560 at 344.678 kb on + strand, within HSERO_RS01560 at 345.024 kb on + strand, within HSERO_RS01560 at 345.032 kb on - strand, within HSERO_RS01560 at 345.050 kb on + strand, within HSERO_RS01560 at 345.063 kb on + strand, within HSERO_RS01560 at 345.084 kb on + strand, within HSERO_RS01560 at 345.174 kb on + strand, within HSERO_RS01560 at 345.494 kb on + strand, within HSERO_RS01560 at 345.592 kb on + strand, within HSERO_RS01560 at 345.600 kb on - strand, within HSERO_RS01560 at 345.833 kb on + strand, within HSERO_RS01560 at 345.974 kb on + strand, within HSERO_RS01560 at 346.152 kb on + strand, within HSERO_RS01560 at 346.232 kb on - strand, within HSERO_RS01560 at 346.234 kb on + strand, within HSERO_RS01560 at 346.242 kb on + strand, within HSERO_RS01560 at 346.252 kb on + strand, within HSERO_RS01560 at 346.474 kb on + strand, within HSERO_RS01560 at 346.727 kb on - strand, within HSERO_RS01560 at 346.856 kb on + strand, within HSERO_RS01560 at 346.890 kb on + strand, within HSERO_RS01560 at 346.958 kb on + strand, within HSERO_RS01560 at 346.979 kb on - strand at 347.081 kb on - strand at 347.086 kb on - strand at 347.332 kb on - strand at 347.335 kb on + strand at 347.401 kb on - strand at 347.451 kb on - strand at 347.538 kb on - strand, within HSERO_RS01565 at 347.564 kb on - strand, within HSERO_RS01565 at 347.678 kb on - strand, within HSERO_RS01565 at 347.773 kb on - strand, within HSERO_RS01565 at 347.773 kb on - strand, within HSERO_RS01565 at 347.774 kb on + strand, within HSERO_RS01565 at 347.782 kb on - strand, within HSERO_RS01565 at 347.797 kb on - strand, within HSERO_RS01565 at 347.836 kb on - strand, within HSERO_RS01565 at 347.969 kb on - strand, within HSERO_RS01565 at 347.976 kb on + strand, within HSERO_RS01565 at 348.189 kb on - strand, within HSERO_RS01565
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 343,380 - HSERO_RS01555 0.56 -0.2 343,422 + -0.5 343,440 + HSERO_RS01555 0.60 -1.3 343,467 + HSERO_RS01555 0.62 -1.0 343,472 + HSERO_RS01555 0.62 -1.7 343,477 + HSERO_RS01555 0.63 -1.1 343,565 - HSERO_RS01555 0.69 -1.0 343,705 - HSERO_RS01555 0.78 -0.9 343,742 - HSERO_RS01555 0.80 -1.4 343,776 - HSERO_RS01555 0.82 -0.0 343,834 - HSERO_RS01555 0.86 -1.9 343,845 + HSERO_RS01555 0.87 -1.4 343,942 - +0.1 344,178 + -0.3 344,212 - -1.0 344,246 - -1.0 344,316 + -1.7 344,347 - -2.3 344,478 - HSERO_RS01560 0.13 -3.3 344,485 + HSERO_RS01560 0.13 -1.0 344,526 - HSERO_RS01560 0.14 +0.3 344,625 + HSERO_RS01560 0.17 -0.8 344,678 + HSERO_RS01560 0.19 -0.3 344,678 + HSERO_RS01560 0.19 -0.3 345,024 + HSERO_RS01560 0.30 -0.8 345,032 - HSERO_RS01560 0.30 -0.4 345,050 + HSERO_RS01560 0.30 -0.7 345,063 + HSERO_RS01560 0.31 -2.0 345,084 + HSERO_RS01560 0.31 -0.1 345,174 + HSERO_RS01560 0.34 -0.9 345,494 + HSERO_RS01560 0.44 -0.4 345,592 + HSERO_RS01560 0.47 +1.5 345,600 - HSERO_RS01560 0.47 +0.4 345,833 + HSERO_RS01560 0.55 -0.6 345,974 + HSERO_RS01560 0.59 -0.3 346,152 + HSERO_RS01560 0.65 -2.1 346,232 - HSERO_RS01560 0.67 -4.7 346,234 + HSERO_RS01560 0.67 -1.1 346,242 + HSERO_RS01560 0.67 -1.1 346,252 + HSERO_RS01560 0.68 -0.5 346,474 + HSERO_RS01560 0.75 -0.6 346,727 - HSERO_RS01560 0.82 -0.1 346,856 + HSERO_RS01560 0.86 -1.8 346,890 + HSERO_RS01560 0.88 +0.4 346,958 + HSERO_RS01560 0.90 +0.4 346,979 - -2.4 347,081 - +1.7 347,086 - -1.3 347,332 - -1.0 347,335 + +0.6 347,401 - -0.9 347,451 - -0.1 347,538 - HSERO_RS01565 0.12 -2.4 347,564 - HSERO_RS01565 0.14 -1.2 347,678 - HSERO_RS01565 0.24 -0.8 347,773 - HSERO_RS01565 0.32 -0.8 347,773 - HSERO_RS01565 0.32 -2.4 347,774 + HSERO_RS01565 0.32 -1.4 347,782 - HSERO_RS01565 0.33 -1.5 347,797 - HSERO_RS01565 0.34 -0.9 347,836 - HSERO_RS01565 0.37 -0.9 347,969 - HSERO_RS01565 0.48 +2.3 347,976 + HSERO_RS01565 0.49 -1.2 348,189 - HSERO_RS01565 0.67 -1.7
Or see this region's nucleotide sequence