Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00325

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
78,103	+		HSERO_RS00315	0.81	+1.3
78,106	-		HSERO_RS00315	0.81	-0.3
78,264	-				-0.6
78,264	-				-0.0
78,302	-				-2.1
78,466	+		HSERO_RS00320	0.29	+0.6
78,474	-		HSERO_RS00320	0.30	-0.2
78,720	+		HSERO_RS00320	0.64	+1.1
78,764	-		HSERO_RS00320	0.71	-0.4
78,845	-		HSERO_RS00320	0.82	-0.3
78,857	+		HSERO_RS00320	0.83	+1.5
78,875	-		HSERO_RS00320	0.86	+0.8
79,035	+				-0.1
79,035	+				-0.6
79,124	-		HSERO_RS00325	0.10	-0.7
79,260	-		HSERO_RS00325	0.26	-1.0
79,332	-		HSERO_RS00325	0.35	-0.1
79,407	-		HSERO_RS00325	0.44	-0.5
79,507	-		HSERO_RS00325	0.56	-0.5
79,533	+		HSERO_RS00325	0.59	+0.4
79,533	+		HSERO_RS00325	0.59	+0.5
79,541	-		HSERO_RS00325	0.60	-0.3
79,627	-		HSERO_RS00325	0.70	-0.4
79,671	-		HSERO_RS00325	0.75	+0.1
79,676	+		HSERO_RS00325	0.76	-1.0
79,717	+				-1.3
79,725	-		HSERO_RS00325	0.81	-0.5
79,809	+				-0.7
79,809	+				-0.4
79,809	+				-3.1
79,856	-				-1.2
79,959	+		HSERO_RS00330	0.12	+2.6
80,050	-				+5.6
80,172	-		HSERO_RS00330	0.43	+0.1
80,240	+		HSERO_RS00330	0.53	+1.3
80,264	-		HSERO_RS00330	0.57	+0.3
80,430	+		HSERO_RS00330	0.81	-0.7
80,464	-		HSERO_RS00330	0.86	-0.7
80,475	-		HSERO_RS00330	0.88	+2.3
80,524	+				+0.1
80,532	-				-0.1
80,539	+				-1.4
80,681	-				-0.7
80,691	-				-1.1