Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01160 and PGA1_262p01165 are separated by 59 nucleotides PGA1_262p01165 and PGA1_262p01170 are separated by 118 nucleotides
PGA1_262p01160: PGA1_262p01160 - Uncharacterized iron-regulated membrane protein, at 127,740 to 129,128
_262p01160
PGA1_262p01165: PGA1_262p01165 - hypothetical protein, at 129,188 to 129,568
_262p01165
PGA1_262p01170: PGA1_262p01170 - putative nnrS protein, at 129,687 to 130,910
_262p01170
Position (kb) 129
130 Strain fitness (log2 ratio) -1
0
1
2 at 128.410 kb on - strand, within PGA1_262p01160 at 128.503 kb on + strand, within PGA1_262p01160 at 128.574 kb on - strand, within PGA1_262p01160 at 128.762 kb on - strand, within PGA1_262p01160 at 128.773 kb on - strand, within PGA1_262p01160 at 128.907 kb on - strand, within PGA1_262p01160 at 129.123 kb on + strand at 129.124 kb on + strand at 129.167 kb on + strand at 129.176 kb on - strand at 129.190 kb on + strand at 129.238 kb on + strand, within PGA1_262p01165 at 129.371 kb on - strand, within PGA1_262p01165 at 129.516 kb on - strand, within PGA1_262p01165 at 129.516 kb on - strand, within PGA1_262p01165 at 129.582 kb on - strand at 129.643 kb on - strand at 129.735 kb on - strand at 129.740 kb on - strand at 129.740 kb on - strand at 129.783 kb on - strand at 129.802 kb on - strand at 130.443 kb on + strand, within PGA1_262p01170 at 130.493 kb on + strand, within PGA1_262p01170 at 130.504 kb on + strand, within PGA1_262p01170
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 128,410 - PGA1_262p01160 0.48 +0.4 128,503 + PGA1_262p01160 0.55 -0.7 128,574 - PGA1_262p01160 0.60 +1.3 128,762 - PGA1_262p01160 0.74 -0.3 128,773 - PGA1_262p01160 0.74 +0.1 128,907 - PGA1_262p01160 0.84 -0.2 129,123 + -0.5 129,124 + -0.4 129,167 + +0.3 129,176 - +0.1 129,190 + +0.5 129,238 + PGA1_262p01165 0.13 +0.6 129,371 - PGA1_262p01165 0.48 +0.9 129,516 - PGA1_262p01165 0.86 +1.1 129,516 - PGA1_262p01165 0.86 +2.3 129,582 - -0.7 129,643 - +0.1 129,735 - +0.2 129,740 - +0.8 129,740 - +0.9 129,783 - -0.4 129,802 - +0.9 130,443 + PGA1_262p01170 0.62 +0.4 130,493 + PGA1_262p01170 0.66 +0.2 130,504 + PGA1_262p01170 0.67 +0.2
Or see this region's nucleotide sequence