Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03060 and PGA1_c03070 are separated by 106 nucleotides PGA1_c03070 and PGA1_c03080 are separated by 76 nucleotides PGA1_c03080 and PGA1_c03090 are separated by 137 nucleotides
PGA1_c03060: PGA1_c03060 - aspartate carbamoyltransferase PyrB, at 292,804 to 293,799
_c03060
PGA1_c03070: PGA1_c03070 - putative uracil DNA glycosylase, at 293,906 to 294,667
_c03070
PGA1_c03080: PGA1_c03080 - molybdenum cofactor biosynthesis protein B, at 294,744 to 295,286
_c03080
PGA1_c03090: PGA1_c03090 - putative secretion protein, at 295,424 to 296,914
_c03090
Position (kb) 294
295
296 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 293.790 kb on - strand at 293.794 kb on + strand at 293.797 kb on - strand at 293.806 kb on + strand at 293.825 kb on + strand at 293.825 kb on + strand at 293.825 kb on + strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.836 kb on + strand at 293.836 kb on + strand at 293.836 kb on + strand at 293.844 kb on - strand at 293.844 kb on - strand at 293.844 kb on - strand at 293.844 kb on - strand at 293.858 kb on + strand at 293.879 kb on - strand at 293.882 kb on + strand at 293.892 kb on + strand at 294.640 kb on + strand at 294.648 kb on - strand at 294.648 kb on - strand at 294.729 kb on - strand at 294.734 kb on + strand at 294.742 kb on - strand at 294.742 kb on - strand at 294.753 kb on + strand at 294.800 kb on - strand, within PGA1_c03080 at 294.811 kb on + strand, within PGA1_c03080 at 294.982 kb on + strand, within PGA1_c03080 at 294.982 kb on + strand, within PGA1_c03080 at 294.987 kb on + strand, within PGA1_c03080 at 295.017 kb on + strand, within PGA1_c03080 at 295.062 kb on + strand, within PGA1_c03080 at 295.062 kb on + strand, within PGA1_c03080 at 295.062 kb on + strand, within PGA1_c03080 at 295.128 kb on + strand, within PGA1_c03080 at 295.165 kb on + strand, within PGA1_c03080 at 295.165 kb on + strand, within PGA1_c03080 at 295.165 kb on + strand, within PGA1_c03080 at 295.269 kb on + strand at 295.269 kb on + strand at 295.291 kb on + strand at 295.291 kb on + strand at 295.291 kb on + strand at 295.307 kb on + strand at 295.307 kb on + strand at 295.315 kb on - strand at 295.316 kb on - strand at 295.317 kb on - strand at 295.318 kb on + strand at 295.332 kb on - strand at 295.337 kb on - strand at 295.357 kb on - strand at 295.517 kb on + strand at 295.517 kb on + strand at 295.653 kb on + strand, within PGA1_c03090 at 295.653 kb on + strand, within PGA1_c03090 at 295.712 kb on - strand, within PGA1_c03090 at 295.775 kb on + strand, within PGA1_c03090 at 295.847 kb on - strand, within PGA1_c03090 at 295.849 kb on + strand, within PGA1_c03090 at 295.943 kb on - strand, within PGA1_c03090 at 295.987 kb on - strand, within PGA1_c03090 at 296.010 kb on + strand, within PGA1_c03090 at 296.020 kb on + strand, within PGA1_c03090 at 296.083 kb on + strand, within PGA1_c03090 at 296.083 kb on + strand, within PGA1_c03090 at 296.113 kb on + strand, within PGA1_c03090 at 296.121 kb on + strand, within PGA1_c03090 at 296.181 kb on - strand, within PGA1_c03090 at 296.230 kb on - strand, within PGA1_c03090 at 296.271 kb on + strand, within PGA1_c03090 at 296.279 kb on - strand, within PGA1_c03090
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 293,790 - -3.9 293,794 + -1.3 293,797 - -2.9 293,806 + -1.0 293,825 + +0.6 293,825 + -0.0 293,825 + +0.7 293,832 - +0.2 293,832 - +0.4 293,832 - +0.4 293,832 - -0.2 293,832 - +0.5 293,836 + +0.1 293,836 + -1.7 293,836 + -0.5 293,844 - -1.2 293,844 - +0.1 293,844 - +0.4 293,844 - -0.6 293,858 + +0.1 293,879 - -0.1 293,882 + +0.9 293,892 + -0.1 294,640 + +0.1 294,648 - -0.5 294,648 - +0.7 294,729 - +0.5 294,734 + -0.2 294,742 - -0.3 294,742 - +0.2 294,753 + +0.1 294,800 - PGA1_c03080 0.10 +1.0 294,811 + PGA1_c03080 0.12 +0.9 294,982 + PGA1_c03080 0.44 +0.9 294,982 + PGA1_c03080 0.44 +0.2 294,987 + PGA1_c03080 0.45 +0.3 295,017 + PGA1_c03080 0.50 +1.1 295,062 + PGA1_c03080 0.59 -0.1 295,062 + PGA1_c03080 0.59 +0.5 295,062 + PGA1_c03080 0.59 +1.1 295,128 + PGA1_c03080 0.71 -0.1 295,165 + PGA1_c03080 0.78 +0.2 295,165 + PGA1_c03080 0.78 +1.0 295,165 + PGA1_c03080 0.78 +0.9 295,269 + -0.2 295,269 + +1.1 295,291 + +0.7 295,291 + +1.5 295,291 + +0.4 295,307 + +0.1 295,307 + +0.3 295,315 - -0.1 295,316 - -1.0 295,317 - +0.2 295,318 + -2.6 295,332 - +0.5 295,337 - +0.6 295,357 - +0.6 295,517 + +0.1 295,517 + +1.2 295,653 + PGA1_c03090 0.15 -0.2 295,653 + PGA1_c03090 0.15 +1.1 295,712 - PGA1_c03090 0.19 -0.1 295,775 + PGA1_c03090 0.24 -0.6 295,847 - PGA1_c03090 0.28 +0.4 295,849 + PGA1_c03090 0.29 +0.4 295,943 - PGA1_c03090 0.35 +0.3 295,987 - PGA1_c03090 0.38 -1.7 296,010 + PGA1_c03090 0.39 +1.0 296,020 + PGA1_c03090 0.40 +0.0 296,083 + PGA1_c03090 0.44 -0.5 296,083 + PGA1_c03090 0.44 +0.8 296,113 + PGA1_c03090 0.46 +0.6 296,121 + PGA1_c03090 0.47 +1.6 296,181 - PGA1_c03090 0.51 +0.6 296,230 - PGA1_c03090 0.54 +0.1 296,271 + PGA1_c03090 0.57 +0.6 296,279 - PGA1_c03090 0.57 -0.3
Or see this region's nucleotide sequence