Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04135 and BWI76_RS04140 are separated by 52 nucleotides BWI76_RS04140 and BWI76_RS04145 are separated by 94 nucleotides BWI76_RS04145 and BWI76_RS04150 are separated by 58 nucleotides
BWI76_RS04135: BWI76_RS04135 - thymidine phosphorylase, at 850,425 to 851,747
_RS04135
BWI76_RS04140: BWI76_RS04140 - phosphopentomutase, at 851,800 to 853,023
_RS04140
BWI76_RS04145: BWI76_RS04145 - purine-nucleoside phosphorylase, at 853,118 to 853,840
_RS04145
BWI76_RS04150: BWI76_RS04150 - lipoate--protein ligase A, at 853,899 to 854,915
_RS04150
Position (kb) 851
852
853
854 Strain fitness (log2 ratio) -1
0
1 at 850.836 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.077 kb on - strand, within BWI76_RS04135 at 851.136 kb on + strand at 851.331 kb on + strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135 at 851.661 kb on - strand at 851.663 kb on + strand at 851.752 kb on + strand at 851.755 kb on - strand at 851.760 kb on - strand at 851.896 kb on - strand at 851.972 kb on + strand, within BWI76_RS04140 at 851.980 kb on - strand, within BWI76_RS04140 at 851.990 kb on - strand, within BWI76_RS04140 at 852.095 kb on + strand, within BWI76_RS04140 at 852.195 kb on + strand, within BWI76_RS04140 at 852.378 kb on + strand, within BWI76_RS04140 at 852.585 kb on + strand, within BWI76_RS04140 at 852.856 kb on + strand, within BWI76_RS04140 at 852.866 kb on + strand, within BWI76_RS04140 at 852.948 kb on - strand at 853.171 kb on + strand at 853.670 kb on + strand, within BWI76_RS04145 at 853.696 kb on - strand, within BWI76_RS04145 at 853.751 kb on + strand, within BWI76_RS04145 at 853.789 kb on - strand at 853.815 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 850,836 + BWI76_RS04135 0.31 -0.3 851,062 + BWI76_RS04135 0.48 -1.1 851,062 + BWI76_RS04135 0.48 +0.6 851,077 - BWI76_RS04135 0.49 +0.6 851,136 + -0.8 851,331 + BWI76_RS04135 0.68 -0.2 851,339 - BWI76_RS04135 0.69 +0.3 851,339 - BWI76_RS04135 0.69 +0.6 851,661 - -0.3 851,663 + -0.4 851,752 + -0.3 851,755 - -0.2 851,760 - +0.2 851,896 - +0.0 851,972 + BWI76_RS04140 0.14 +0.3 851,980 - BWI76_RS04140 0.15 +0.4 851,990 - BWI76_RS04140 0.16 -0.8 852,095 + BWI76_RS04140 0.24 +0.2 852,195 + BWI76_RS04140 0.32 -0.3 852,378 + BWI76_RS04140 0.47 -0.1 852,585 + BWI76_RS04140 0.64 -0.4 852,856 + BWI76_RS04140 0.86 +0.7 852,866 + BWI76_RS04140 0.87 +0.1 852,948 - -0.3 853,171 + +0.2 853,670 + BWI76_RS04145 0.76 -0.0 853,696 - BWI76_RS04145 0.80 -0.2 853,751 + BWI76_RS04145 0.88 +1.4 853,789 - -0.3 853,815 + -0.9
Or see this region's nucleotide sequence