Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18905 and ABZR87_RS18910 are separated by 240 nucleotides ABZR87_RS18910 and ABZR87_RS18915 overlap by 4 nucleotides ABZR87_RS18915 and ABZR87_RS18920 are separated by 13 nucleotides ABZR87_RS18920 and ABZR87_RS18925 are separated by 14 nucleotides
ABZR87_RS18905: ABZR87_RS18905 - phage late control D family protein, at 598,954 to 600,012
_RS18905
ABZR87_RS18910: ABZR87_RS18910 - DUF2239 family protein, at 600,253 to 600,867
_RS18910
ABZR87_RS18915: ABZR87_RS18915 - MATE family efflux transporter, at 600,864 to 602,231
_RS18915
ABZR87_RS18920: ABZR87_RS18920 - Rieske (2Fe-2S) protein, at 602,245 to 602,556
_RS18920
ABZR87_RS18925: ABZR87_RS18925 - alpha/beta hydrolase, at 602,571 to 603,146
_RS18925
Position (kb) 600
601
602
603 Strain fitness (log2 ratio) -2
-1
0
1
2 at 599.971 kb on + strand at 599.972 kb on - strand at 600.027 kb on + strand at 600.028 kb on - strand at 600.028 kb on - strand at 600.126 kb on + strand at 600.126 kb on + strand at 600.126 kb on + strand at 600.127 kb on - strand at 600.127 kb on - strand at 600.154 kb on - strand at 600.154 kb on - strand at 600.157 kb on + strand at 600.157 kb on + strand at 600.157 kb on + strand at 600.157 kb on + strand at 600.157 kb on + strand at 600.157 kb on + strand at 600.157 kb on + strand at 600.157 kb on + strand at 600.158 kb on - strand at 600.158 kb on - strand at 600.158 kb on - strand at 600.158 kb on - strand at 600.158 kb on - strand at 600.164 kb on + strand at 600.165 kb on - strand at 600.165 kb on - strand at 600.200 kb on + strand at 600.200 kb on + strand at 600.200 kb on + strand at 600.200 kb on + strand at 600.201 kb on - strand at 600.201 kb on - strand at 600.201 kb on - strand at 600.235 kb on + strand at 600.236 kb on - strand at 600.236 kb on - strand at 600.361 kb on + strand, within ABZR87_RS18910 at 600.688 kb on + strand, within ABZR87_RS18910 at 600.972 kb on + strand at 600.972 kb on + strand at 600.972 kb on + strand at 600.972 kb on + strand at 600.972 kb on + strand at 600.972 kb on + strand at 600.972 kb on + strand at 600.973 kb on - strand at 600.973 kb on - strand at 600.973 kb on - strand at 600.973 kb on - strand at 600.973 kb on - strand at 600.973 kb on - strand at 601.260 kb on + strand, within ABZR87_RS18915 at 601.261 kb on - strand, within ABZR87_RS18915 at 601.261 kb on - strand, within ABZR87_RS18915 at 601.265 kb on + strand, within ABZR87_RS18915 at 601.266 kb on - strand, within ABZR87_RS18915 at 601.278 kb on + strand, within ABZR87_RS18915 at 601.278 kb on + strand, within ABZR87_RS18915 at 601.278 kb on + strand, within ABZR87_RS18915 at 601.278 kb on + strand, within ABZR87_RS18915 at 601.278 kb on + strand, within ABZR87_RS18915 at 601.278 kb on + strand, within ABZR87_RS18915 at 601.278 kb on + strand, within ABZR87_RS18915 at 601.278 kb on + strand, within ABZR87_RS18915 at 601.278 kb on + strand, within ABZR87_RS18915 at 601.279 kb on - strand, within ABZR87_RS18915 at 601.279 kb on - strand, within ABZR87_RS18915 at 601.279 kb on - strand, within ABZR87_RS18915 at 601.279 kb on - strand, within ABZR87_RS18915 at 601.279 kb on - strand, within ABZR87_RS18915 at 601.302 kb on + strand, within ABZR87_RS18915 at 601.303 kb on - strand, within ABZR87_RS18915 at 601.695 kb on + strand, within ABZR87_RS18915 at 601.722 kb on + strand, within ABZR87_RS18915 at 601.722 kb on + strand, within ABZR87_RS18915 at 601.723 kb on - strand, within ABZR87_RS18915 at 601.723 kb on - strand, within ABZR87_RS18915 at 601.723 kb on - strand, within ABZR87_RS18915 at 601.796 kb on + strand, within ABZR87_RS18915 at 602.172 kb on + strand at 602.172 kb on + strand at 602.173 kb on - strand at 602.176 kb on - strand at 602.246 kb on + strand at 602.247 kb on - strand at 602.448 kb on - strand, within ABZR87_RS18920 at 602.497 kb on + strand, within ABZR87_RS18920 at 602.497 kb on + strand, within ABZR87_RS18920 at 602.498 kb on - strand, within ABZR87_RS18920 at 602.498 kb on - strand, within ABZR87_RS18920 at 602.498 kb on - strand, within ABZR87_RS18920 at 602.812 kb on + strand, within ABZR87_RS18925
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 599,971 + +0.6 599,972 - -0.0 600,027 + -0.4 600,028 - -0.1 600,028 - +1.9 600,126 + -0.6 600,126 + -1.8 600,126 + -1.0 600,127 - -0.4 600,127 - -0.2 600,154 - +1.1 600,154 - -0.4 600,157 + -1.8 600,157 + -1.3 600,157 + -1.4 600,157 + -0.6 600,157 + +0.1 600,157 + -1.0 600,157 + -1.0 600,157 + -1.7 600,158 - +0.0 600,158 - -1.8 600,158 - -0.3 600,158 - -0.4 600,158 - +0.9 600,164 + +0.1 600,165 - +0.2 600,165 - -0.1 600,200 + -0.9 600,200 + -0.9 600,200 + -0.6 600,200 + -1.8 600,201 - +0.4 600,201 - -0.7 600,201 - +0.7 600,235 + +1.3 600,236 - -0.8 600,236 - +0.4 600,361 + ABZR87_RS18910 0.18 -1.7 600,688 + ABZR87_RS18910 0.71 -0.7 600,972 + +0.9 600,972 + +0.1 600,972 + -0.3 600,972 + +1.1 600,972 + +0.1 600,972 + -1.8 600,972 + +0.7 600,973 - +0.0 600,973 - +0.3 600,973 - -0.1 600,973 - -0.4 600,973 - +0.1 600,973 - +0.6 601,260 + ABZR87_RS18915 0.29 +0.5 601,261 - ABZR87_RS18915 0.29 -2.0 601,261 - ABZR87_RS18915 0.29 +0.3 601,265 + ABZR87_RS18915 0.29 +1.1 601,266 - ABZR87_RS18915 0.29 +0.9 601,278 + ABZR87_RS18915 0.30 -1.1 601,278 + ABZR87_RS18915 0.30 +0.4 601,278 + ABZR87_RS18915 0.30 -0.4 601,278 + ABZR87_RS18915 0.30 +1.2 601,278 + ABZR87_RS18915 0.30 +0.2 601,278 + ABZR87_RS18915 0.30 +0.6 601,278 + ABZR87_RS18915 0.30 +0.9 601,278 + ABZR87_RS18915 0.30 +1.4 601,278 + ABZR87_RS18915 0.30 +1.0 601,279 - ABZR87_RS18915 0.30 +0.5 601,279 - ABZR87_RS18915 0.30 +0.0 601,279 - ABZR87_RS18915 0.30 -0.2 601,279 - ABZR87_RS18915 0.30 +0.1 601,279 - ABZR87_RS18915 0.30 -0.1 601,302 + ABZR87_RS18915 0.32 +0.8 601,303 - ABZR87_RS18915 0.32 +0.3 601,695 + ABZR87_RS18915 0.61 -0.1 601,722 + ABZR87_RS18915 0.63 -0.5 601,722 + ABZR87_RS18915 0.63 +0.9 601,723 - ABZR87_RS18915 0.63 -0.1 601,723 - ABZR87_RS18915 0.63 +0.9 601,723 - ABZR87_RS18915 0.63 +0.9 601,796 + ABZR87_RS18915 0.68 -0.3 602,172 + +0.4 602,172 + +0.4 602,173 - -0.8 602,176 - -0.1 602,246 + -0.1 602,247 - +0.7 602,448 - ABZR87_RS18920 0.65 -0.4 602,497 + ABZR87_RS18920 0.81 +0.6 602,497 + ABZR87_RS18920 0.81 +0.1 602,498 - ABZR87_RS18920 0.81 -1.3 602,498 - ABZR87_RS18920 0.81 -0.8 602,498 - ABZR87_RS18920 0.81 -0.5 602,812 + ABZR87_RS18925 0.42 +0.3
Or see this region's nucleotide sequence