Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17075 and ABZR87_RS17080 are separated by 172 nucleotides ABZR87_RS17080 and ABZR87_RS17085 are separated by 96 nucleotides ABZR87_RS17085 and ABZR87_RS17090 are separated by 9 nucleotides
ABZR87_RS17075: ABZR87_RS17075 - acyl-CoA thioesterase, at 179,191 to 179,694
_RS17075
ABZR87_RS17080: ABZR87_RS17080 - DUF2946 family protein, at 179,867 to 180,262
_RS17080
ABZR87_RS17085: ABZR87_RS17085 - hypothetical protein, at 180,359 to 180,715
_RS17085
ABZR87_RS17090: ABZR87_RS17090 - TolC family protein, at 180,725 to 182,134
_RS17090
Position (kb) 180
181 Strain fitness (log2 ratio) -1
0
1
2
3 at 179.375 kb on + strand, within ABZR87_RS17075 at 179.376 kb on - strand, within ABZR87_RS17075 at 179.376 kb on - strand, within ABZR87_RS17075 at 179.376 kb on - strand, within ABZR87_RS17075 at 179.388 kb on + strand, within ABZR87_RS17075 at 179.388 kb on + strand, within ABZR87_RS17075 at 179.388 kb on + strand, within ABZR87_RS17075 at 179.462 kb on + strand, within ABZR87_RS17075 at 179.462 kb on + strand, within ABZR87_RS17075 at 179.462 kb on + strand, within ABZR87_RS17075 at 179.463 kb on - strand, within ABZR87_RS17075 at 179.463 kb on - strand, within ABZR87_RS17075 at 179.463 kb on - strand, within ABZR87_RS17075 at 179.550 kb on - strand, within ABZR87_RS17075 at 179.550 kb on - strand, within ABZR87_RS17075 at 179.579 kb on + strand, within ABZR87_RS17075 at 179.579 kb on + strand, within ABZR87_RS17075 at 179.580 kb on - strand, within ABZR87_RS17075 at 179.580 kb on - strand, within ABZR87_RS17075 at 179.580 kb on - strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.688 kb on + strand at 179.689 kb on - strand at 179.689 kb on - strand at 179.689 kb on - strand at 179.819 kb on - strand at 179.823 kb on + strand at 179.823 kb on + strand at 179.823 kb on + strand at 179.824 kb on - strand at 180.008 kb on - strand, within ABZR87_RS17080 at 180.015 kb on + strand, within ABZR87_RS17080 at 180.280 kb on + strand at 180.280 kb on + strand at 180.280 kb on + strand at 180.280 kb on + strand at 180.281 kb on - strand at 180.281 kb on - strand at 180.330 kb on + strand at 180.330 kb on + strand at 180.331 kb on - strand at 180.331 kb on - strand at 180.382 kb on - strand at 180.417 kb on + strand, within ABZR87_RS17085 at 180.536 kb on + strand, within ABZR87_RS17085 at 180.537 kb on - strand, within ABZR87_RS17085 at 180.537 kb on - strand, within ABZR87_RS17085 at 180.546 kb on - strand, within ABZR87_RS17085 at 180.820 kb on + strand at 180.821 kb on - strand at 180.966 kb on + strand, within ABZR87_RS17090 at 180.995 kb on + strand, within ABZR87_RS17090 at 180.995 kb on + strand, within ABZR87_RS17090 at 180.995 kb on + strand, within ABZR87_RS17090 at 181.170 kb on - strand, within ABZR87_RS17090 at 181.239 kb on - strand, within ABZR87_RS17090 at 181.239 kb on - strand, within ABZR87_RS17090 at 181.239 kb on - strand, within ABZR87_RS17090 at 181.239 kb on - strand, within ABZR87_RS17090 at 181.243 kb on + strand, within ABZR87_RS17090 at 181.244 kb on - strand, within ABZR87_RS17090 at 181.244 kb on - strand, within ABZR87_RS17090 at 181.244 kb on - strand, within ABZR87_RS17090 at 181.275 kb on - strand, within ABZR87_RS17090 at 181.275 kb on - strand, within ABZR87_RS17090 at 181.383 kb on - strand, within ABZR87_RS17090 at 181.512 kb on + strand, within ABZR87_RS17090 at 181.513 kb on - strand, within ABZR87_RS17090 at 181.513 kb on - strand, within ABZR87_RS17090 at 181.550 kb on + strand, within ABZR87_RS17090 at 181.550 kb on + strand, within ABZR87_RS17090 at 181.550 kb on + strand, within ABZR87_RS17090 at 181.551 kb on - strand, within ABZR87_RS17090 at 181.664 kb on + strand, within ABZR87_RS17090 at 181.665 kb on - strand, within ABZR87_RS17090 at 181.665 kb on - strand, within ABZR87_RS17090
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 179,375 + ABZR87_RS17075 0.37 -0.4 179,376 - ABZR87_RS17075 0.37 -1.6 179,376 - ABZR87_RS17075 0.37 -1.0 179,376 - ABZR87_RS17075 0.37 -0.5 179,388 + ABZR87_RS17075 0.39 +0.1 179,388 + ABZR87_RS17075 0.39 -0.6 179,388 + ABZR87_RS17075 0.39 -0.5 179,462 + ABZR87_RS17075 0.54 -0.5 179,462 + ABZR87_RS17075 0.54 +1.6 179,462 + ABZR87_RS17075 0.54 +0.2 179,463 - ABZR87_RS17075 0.54 +0.2 179,463 - ABZR87_RS17075 0.54 -0.7 179,463 - ABZR87_RS17075 0.54 -1.7 179,550 - ABZR87_RS17075 0.71 -0.8 179,550 - ABZR87_RS17075 0.71 -0.2 179,579 + ABZR87_RS17075 0.77 +1.3 179,579 + ABZR87_RS17075 0.77 -0.7 179,580 - ABZR87_RS17075 0.77 -0.2 179,580 - ABZR87_RS17075 0.77 +0.4 179,580 - ABZR87_RS17075 0.77 +0.1 179,620 + ABZR87_RS17075 0.85 -0.4 179,620 + ABZR87_RS17075 0.85 -0.6 179,620 + ABZR87_RS17075 0.85 +1.1 179,620 + ABZR87_RS17075 0.85 +1.0 179,688 + -0.5 179,689 - -0.0 179,689 - -0.5 179,689 - -1.5 179,819 - -0.6 179,823 + +0.9 179,823 + +0.2 179,823 + +0.8 179,824 - +0.1 180,008 - ABZR87_RS17080 0.36 -1.5 180,015 + ABZR87_RS17080 0.37 -0.5 180,280 + +0.1 180,280 + +0.5 180,280 + +3.2 180,280 + +0.4 180,281 - +1.3 180,281 - +0.2 180,330 + +0.3 180,330 + -0.6 180,331 - +0.5 180,331 - +0.2 180,382 - -0.6 180,417 + ABZR87_RS17085 0.16 +0.8 180,536 + ABZR87_RS17085 0.50 +1.4 180,537 - ABZR87_RS17085 0.50 -0.9 180,537 - ABZR87_RS17085 0.50 +0.5 180,546 - ABZR87_RS17085 0.52 -0.1 180,820 + -0.1 180,821 - +0.5 180,966 + ABZR87_RS17090 0.17 +0.4 180,995 + ABZR87_RS17090 0.19 -0.1 180,995 + ABZR87_RS17090 0.19 +1.0 180,995 + ABZR87_RS17090 0.19 -0.1 181,170 - ABZR87_RS17090 0.32 -0.4 181,239 - ABZR87_RS17090 0.36 -0.7 181,239 - ABZR87_RS17090 0.36 +0.5 181,239 - ABZR87_RS17090 0.36 -0.6 181,239 - ABZR87_RS17090 0.36 +0.7 181,243 + ABZR87_RS17090 0.37 +0.6 181,244 - ABZR87_RS17090 0.37 +0.9 181,244 - ABZR87_RS17090 0.37 -0.7 181,244 - ABZR87_RS17090 0.37 -0.2 181,275 - ABZR87_RS17090 0.39 +1.0 181,275 - ABZR87_RS17090 0.39 -0.2 181,383 - ABZR87_RS17090 0.47 +0.4 181,512 + ABZR87_RS17090 0.56 +0.5 181,513 - ABZR87_RS17090 0.56 -1.1 181,513 - ABZR87_RS17090 0.56 +0.6 181,550 + ABZR87_RS17090 0.59 +1.1 181,550 + ABZR87_RS17090 0.59 +0.4 181,550 + ABZR87_RS17090 0.59 +1.2 181,551 - ABZR87_RS17090 0.59 -1.1 181,664 + ABZR87_RS17090 0.67 +0.8 181,665 - ABZR87_RS17090 0.67 -0.7 181,665 - ABZR87_RS17090 0.67 -0.5
Or see this region's nucleotide sequence