Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15110

Experiment: Protocatechuic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Protocatechuic Acid (C)
3,187,640	+		ABZR87_RS15105	0.18	-1.3
3,187,640	+		ABZR87_RS15105	0.18	-0.5
3,187,731	-		ABZR87_RS15105	0.26	+0.9
3,187,833	-		ABZR87_RS15105	0.36	+0.9
3,187,874	+		ABZR87_RS15105	0.40	-0.1
3,187,875	-		ABZR87_RS15105	0.40	+0.9
3,187,904	+		ABZR87_RS15105	0.43	+0.4
3,187,904	+		ABZR87_RS15105	0.43	+0.7
3,187,905	-		ABZR87_RS15105	0.43	-0.2
3,187,905	-		ABZR87_RS15105	0.43	-0.2
3,187,982	+		ABZR87_RS15105	0.50	+0.6
3,187,983	-		ABZR87_RS15105	0.50	-0.5
3,188,025	-		ABZR87_RS15105	0.54	-1.5
3,188,025	-		ABZR87_RS15105	0.54	+2.4
3,188,084	+		ABZR87_RS15105	0.59	+0.5
3,188,085	-		ABZR87_RS15105	0.59	-1.5
3,188,211	-		ABZR87_RS15105	0.71	+0.6
3,188,234	+		ABZR87_RS15105	0.73	+0.7
3,188,244	-		ABZR87_RS15105	0.74	-0.5
3,188,249	+		ABZR87_RS15105	0.75	-0.1
3,188,249	+		ABZR87_RS15105	0.75	+0.1
3,188,250	-		ABZR87_RS15105	0.75	+0.3
3,188,346	-		ABZR87_RS15105	0.84	-0.6
3,188,351	+		ABZR87_RS15105	0.84	+1.1
3,188,411	+		ABZR87_RS15105	0.90	-0.5
3,188,411	+		ABZR87_RS15105	0.90	-1.1
3,188,447	+				+0.7
3,188,447	+				+0.7
3,188,447	+				+1.4
3,188,448	-				+0.2
3,188,516	+				-0.3
3,188,517	-				-0.9
3,188,517	-				-0.9
3,188,517	-				-0.8
3,188,517	-				+1.5
3,188,939	+		ABZR87_RS15110	0.14	+0.3
3,188,940	-		ABZR87_RS15110	0.14	-0.0
3,188,940	-		ABZR87_RS15110	0.14	-1.7
3,188,940	-		ABZR87_RS15110	0.14	+1.3
3,188,940	-		ABZR87_RS15110	0.14	-1.2
3,188,940	-		ABZR87_RS15110	0.14	+0.4
3,189,353	+		ABZR87_RS15110	0.32	+0.7
3,189,353	+		ABZR87_RS15110	0.32	+0.3
3,189,354	-		ABZR87_RS15110	0.32	+0.1
3,189,365	+		ABZR87_RS15110	0.32	+0.2
3,189,365	+		ABZR87_RS15110	0.32	-0.9
3,189,375	-		ABZR87_RS15110	0.33	+0.2
3,189,554	+		ABZR87_RS15110	0.40	+0.3
3,189,555	-		ABZR87_RS15110	0.40	-0.6
3,189,761	+		ABZR87_RS15110	0.49	-2.3
3,189,762	-		ABZR87_RS15110	0.49	-0.3
3,189,762	-		ABZR87_RS15110	0.49	+0.2
3,189,762	-		ABZR87_RS15110	0.49	+0.3
3,189,794	+		ABZR87_RS15110	0.51	+0.1
3,189,794	+		ABZR87_RS15110	0.51	+0.7
3,189,794	+		ABZR87_RS15110	0.51	+0.1
3,189,794	+		ABZR87_RS15110	0.51	+0.6
3,189,917	+		ABZR87_RS15110	0.56	-0.0
3,189,917	+		ABZR87_RS15110	0.56	+0.2
3,189,918	-		ABZR87_RS15110	0.56	-0.5
3,189,918	-		ABZR87_RS15110	0.56	+1.3
3,189,918	-		ABZR87_RS15110	0.56	-0.3
3,189,918	-		ABZR87_RS15110	0.56	-0.3
3,189,918	-		ABZR87_RS15110	0.56	+0.1
3,190,150	-		ABZR87_RS15110	0.66	+0.4
3,190,150	-		ABZR87_RS15110	0.66	-0.1
3,190,172	+		ABZR87_RS15110	0.67	+2.1
3,190,172	+		ABZR87_RS15110	0.67	+0.1
3,190,214	+		ABZR87_RS15110	0.69	+1.0
3,190,214	+		ABZR87_RS15110	0.69	+1.4
3,190,215	-		ABZR87_RS15110	0.69	+0.7
3,190,215	-		ABZR87_RS15110	0.69	+0.2
3,190,241	+		ABZR87_RS15110	0.70	-0.6
3,190,241	+		ABZR87_RS15110	0.70	+1.1
3,190,241	+		ABZR87_RS15110	0.70	+0.7
3,190,241	+		ABZR87_RS15110	0.70	+0.3
3,190,242	-		ABZR87_RS15110	0.70	-0.2
3,190,457	+		ABZR87_RS15110	0.79	+0.3
3,190,457	+		ABZR87_RS15110	0.79	+1.0
3,190,457	+		ABZR87_RS15110	0.79	-0.3
3,190,569	-		ABZR87_RS15110	0.84	+0.5
3,190,712	+				+0.1
3,190,712	+				+0.0
3,190,713	-				-1.2
3,190,749	+				-0.3
3,190,857	-				+0.0
3,190,938	+				+0.0
3,190,938	+				+0.2
3,190,938	+				-2.5
3,190,939	-				-1.3
3,190,939	-				-0.3
3,190,939	-				-0.7
3,191,084	-				-1.0
3,191,161	+				-0.3
3,191,176	-				+0.3
3,191,182	+				+0.2
3,191,182	+				-0.9
3,191,183	-				+0.5
3,191,183	-				-0.0
3,191,183	-				-0.7
3,191,183	-				+0.2
3,191,183	-				-0.3
3,191,196	+				+0.9
3,191,196	+				+0.2
3,191,197	-				+0.3
3,191,197	-				-0.3
3,191,197	-				-1.1
3,191,197	-				-0.1
3,191,197	-				+0.4
3,191,201	+				+1.0
3,191,201	+				+0.5
3,191,202	-				-1.2
3,191,233	+				+0.4
3,191,234	-				-0.2
3,191,234	-				-0.5
3,191,234	-				-0.8
3,191,237	+				+0.7
3,191,237	+				+0.4
3,191,237	+				+0.8
3,191,237	+				+0.3
3,191,237	+				+0.7
3,191,237	+				-0.3
3,191,237	+				-0.6
3,191,237	+				+0.3
3,191,237	+				-0.9
3,191,238	-				-0.8
3,191,238	-				+1.2
3,191,238	-				+0.6
3,191,238	-				+1.7
3,191,238	-				+0.2
3,191,238	-				-0.7
3,191,238	-				-0.2
3,191,238	-				-1.1
3,191,238	-				-0.8
3,191,238	-				+0.8
3,191,238	-				-0.6
3,191,356	+		ABZR87_RS15115	0.19	-0.7
3,191,357	-		ABZR87_RS15115	0.19	-0.0
3,191,357	-		ABZR87_RS15115	0.19	+0.5
3,191,357	-		ABZR87_RS15115	0.19	+0.1
3,191,413	+		ABZR87_RS15115	0.27	-0.5
3,191,455	+		ABZR87_RS15115	0.33	+0.3
3,191,461	+		ABZR87_RS15115	0.34	-0.1
3,191,461	+		ABZR87_RS15115	0.34	-0.1
3,191,461	+		ABZR87_RS15115	0.34	-0.1
3,191,461	+		ABZR87_RS15115	0.34	-0.5
3,191,462	-		ABZR87_RS15115	0.34	+0.5
3,191,491	+		ABZR87_RS15115	0.39	+0.0
3,191,491	+		ABZR87_RS15115	0.39	-0.5
3,191,492	-		ABZR87_RS15115	0.39	+0.8
3,191,492	-		ABZR87_RS15115	0.39	-0.4
3,191,560	+		ABZR87_RS15115	0.49	-1.2
3,191,614	+		ABZR87_RS15115	0.57	-0.3
3,191,632	+		ABZR87_RS15115	0.60	+1.8
3,191,632	+		ABZR87_RS15115	0.60	-0.0
3,191,632	+		ABZR87_RS15115	0.60	+0.2
3,191,633	-		ABZR87_RS15115	0.60	-0.0
3,191,633	-		ABZR87_RS15115	0.60	-0.4
3,191,633	-		ABZR87_RS15115	0.60	-2.5
3,191,633	-		ABZR87_RS15115	0.60	-0.7
3,191,633	-		ABZR87_RS15115	0.60	-1.4
3,191,701	+		ABZR87_RS15115	0.70	+0.7
3,191,702	-		ABZR87_RS15115	0.70	-1.2
3,191,702	-		ABZR87_RS15115	0.70	-0.1
3,191,702	-		ABZR87_RS15115	0.70	+0.1
3,191,702	-		ABZR87_RS15115	0.70	+0.7
3,191,702	-		ABZR87_RS15115	0.70	-0.5
3,191,752	+		ABZR87_RS15115	0.78	+1.0
3,191,752	+		ABZR87_RS15115	0.78	-0.1
3,191,752	+		ABZR87_RS15115	0.78	+0.1
3,191,752	+		ABZR87_RS15115	0.78	+0.3
3,191,900	+				-0.4
3,191,900	+				-1.5
3,191,901	-				+0.2