Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07270

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07260 and ABZR87_RS07265 are separated by 54 nucleotidesABZR87_RS07265 and ABZR87_RS07270 are separated by 16 nucleotidesABZR87_RS07270 and ABZR87_RS07275 are separated by 327 nucleotides ABZR87_RS07260: ABZR87_RS07260 - phosphopantetheine-binding protein, at 1,539,289 to 1,539,549 _RS07260 ABZR87_RS07265: ABZR87_RS07265 - glycosyltransferase family 2 protein, at 1,539,604 to 1,540,374 _RS07265 ABZR87_RS07270: ABZR87_RS07270 - TetR/AcrR family transcriptional regulator, at 1,540,391 to 1,540,969 _RS07270 ABZR87_RS07275: ABZR87_RS07275 - SEL1-like repeat protein, at 1,541,297 to 1,541,878 _RS07275 Position (kb) 1540 1541Strain fitness (log2 ratio) -2 -1 0 1 2at 1539.451 kb on + strand, within ABZR87_RS07260at 1539.451 kb on + strand, within ABZR87_RS07260at 1539.451 kb on + strand, within ABZR87_RS07260at 1539.452 kb on - strand, within ABZR87_RS07260at 1539.523 kb on + strand, within ABZR87_RS07260at 1539.523 kb on + strand, within ABZR87_RS07260at 1539.524 kb on - strandat 1539.524 kb on - strandat 1539.524 kb on - strandat 1539.547 kb on + strandat 1539.548 kb on - strandat 1539.548 kb on - strandat 1539.586 kb on + strandat 1539.586 kb on + strandat 1539.587 kb on - strandat 1539.652 kb on + strandat 1539.652 kb on + strandat 1539.652 kb on + strandat 1539.653 kb on - strandat 1539.653 kb on - strandat 1539.875 kb on - strand, within ABZR87_RS07265at 1539.875 kb on - strand, within ABZR87_RS07265at 1540.074 kb on + strand, within ABZR87_RS07265at 1540.074 kb on + strand, within ABZR87_RS07265at 1540.074 kb on + strand, within ABZR87_RS07265at 1540.074 kb on + strand, within ABZR87_RS07265at 1540.075 kb on - strand, within ABZR87_RS07265at 1540.075 kb on - strand, within ABZR87_RS07265at 1540.075 kb on - strand, within ABZR87_RS07265at 1540.181 kb on + strand, within ABZR87_RS07265at 1540.181 kb on + strand, within ABZR87_RS07265at 1540.181 kb on + strand, within ABZR87_RS07265at 1540.182 kb on - strand, within ABZR87_RS07265at 1540.182 kb on - strand, within ABZR87_RS07265at 1540.182 kb on - strand, within ABZR87_RS07265at 1540.182 kb on - strand, within ABZR87_RS07265at 1540.228 kb on + strand, within ABZR87_RS07265at 1540.373 kb on - strandat 1540.518 kb on + strand, within ABZR87_RS07270at 1540.518 kb on + strand, within ABZR87_RS07270at 1540.518 kb on + strand, within ABZR87_RS07270at 1540.518 kb on + strand, within ABZR87_RS07270at 1540.518 kb on + strand, within ABZR87_RS07270at 1540.518 kb on + strand, within ABZR87_RS07270at 1540.518 kb on + strand, within ABZR87_RS07270at 1540.519 kb on - strand, within ABZR87_RS07270at 1540.519 kb on - strand, within ABZR87_RS07270at 1540.519 kb on - strand, within ABZR87_RS07270at 1540.519 kb on - strand, within ABZR87_RS07270at 1540.519 kb on - strand, within ABZR87_RS07270at 1540.519 kb on - strand, within ABZR87_RS07270at 1540.543 kb on + strand, within ABZR87_RS07270at 1540.544 kb on - strand, within ABZR87_RS07270at 1540.707 kb on + strand, within ABZR87_RS07270at 1540.707 kb on + strand, within ABZR87_RS07270at 1540.708 kb on - strand, within ABZR87_RS07270at 1540.738 kb on + strand, within ABZR87_RS07270at 1540.738 kb on + strand, within ABZR87_RS07270at 1540.738 kb on + strand, within ABZR87_RS07270at 1540.785 kb on + strand, within ABZR87_RS07270at 1540.785 kb on + strand, within ABZR87_RS07270at 1540.785 kb on + strand, within ABZR87_RS07270at 1540.785 kb on + strand, within ABZR87_RS07270at 1540.785 kb on + strand, within ABZR87_RS07270at 1540.785 kb on + strand, within ABZR87_RS07270at 1540.785 kb on + strand, within ABZR87_RS07270at 1540.785 kb on + strand, within ABZR87_RS07270at 1540.785 kb on + strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.786 kb on - strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.789 kb on + strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.790 kb on - strand, within ABZR87_RS07270at 1540.792 kb on - strand, within ABZR87_RS07270at 1540.792 kb on - strand, within ABZR87_RS07270at 1540.792 kb on - strand, within ABZR87_RS07270at 1540.792 kb on - strand, within ABZR87_RS07270at 1540.792 kb on - strand, within ABZR87_RS07270at 1540.845 kb on + strand, within ABZR87_RS07270at 1540.846 kb on - strand, within ABZR87_RS07270at 1540.846 kb on - strand, within ABZR87_RS07270at 1540.846 kb on - strand, within ABZR87_RS07270at 1540.856 kb on - strand, within ABZR87_RS07270at 1540.856 kb on - strand, within ABZR87_RS07270at 1541.001 kb on + strandat 1541.002 kb on - strandat 1541.002 kb on - strandat 1541.002 kb on - strandat 1541.002 kb on - strandat 1541.079 kb on + strandat 1541.080 kb on - strandat 1541.080 kb on - strandat 1541.089 kb on + strandat 1541.129 kb on + strandat 1541.130 kb on - strandat 1541.130 kb on - strandat 1541.130 kb on - strandat 1541.130 kb on - strandat 1541.132 kb on - strandat 1541.151 kb on + strandat 1541.152 kb on - strandat 1541.278 kb on + strandat 1541.278 kb on + strandat 1541.279 kb on - strandat 1541.443 kb on + strand, within ABZR87_RS07275at 1541.444 kb on - strand, within ABZR87_RS07275at 1541.480 kb on + strand, within ABZR87_RS07275at 1541.510 kb on + strand, within ABZR87_RS07275at 1541.511 kb on - strand, within ABZR87_RS07275at 1541.529 kb on - strand, within ABZR87_RS07275at 1541.561 kb on + strand, within ABZR87_RS07275at 1541.561 kb on + strand, within ABZR87_RS07275at 1541.561 kb on + strand, within ABZR87_RS07275at 1541.561 kb on + strand, within ABZR87_RS07275at 1541.562 kb on - strand, within ABZR87_RS07275at 1541.562 kb on - strand, within ABZR87_RS07275at 1541.562 kb on - strand, within ABZR87_RS07275at 1541.562 kb on - strand, within ABZR87_RS07275at 1541.562 kb on - strand, within ABZR87_RS07275at 1541.562 kb on - strand, within ABZR87_RS07275at 1541.562 kb on - strand, within ABZR87_RS07275at 1541.562 kb on - strand, within ABZR87_RS07275at 1541.562 kb on - strand, within ABZR87_RS07275at 1541.636 kb on + strand, within ABZR87_RS07275at 1541.636 kb on + strand, within ABZR87_RS07275at 1541.636 kb on + strand, within ABZR87_RS07275at 1541.637 kb on - strand, within ABZR87_RS07275at 1541.637 kb on - strand, within ABZR87_RS07275at 1541.637 kb on - strand, within ABZR87_RS07275at 1541.637 kb on - strand, within ABZR87_RS07275at 1541.637 kb on - strand, within ABZR87_RS07275at 1541.637 kb on - strand, within ABZR87_RS07275at 1541.777 kb on + strand, within ABZR87_RS07275at 1541.777 kb on + strand, within ABZR87_RS07275at 1541.777 kb on + strand, within ABZR87_RS07275at 1541.778 kb on - strand, within ABZR87_RS07275at 1541.778 kb on - strand, within ABZR87_RS07275at 1541.807 kb on + strand, within ABZR87_RS07275at 1541.807 kb on + strand, within ABZR87_RS07275at 1541.807 kb on + strand, within ABZR87_RS07275at 1541.807 kb on + strand, within ABZR87_RS07275at 1541.808 kb on - strand, within ABZR87_RS07275at 1541.808 kb on - strand, within ABZR87_RS07275at 1541.808 kb on - strand, within ABZR87_RS07275at 1541.808 kb on - strand, within ABZR87_RS07275at 1541.808 kb on - strand, within ABZR87_RS07275at 1541.810 kb on + strand, within ABZR87_RS07275at 1541.810 kb on + strand, within ABZR87_RS07275at 1541.810 kb on + strand, within ABZR87_RS07275at 1541.810 kb on + strand, within ABZR87_RS07275at 1541.810 kb on + strand, within ABZR87_RS07275at 1541.810 kb on + strand, within ABZR87_RS07275at 1541.810 kb on + strand, within ABZR87_RS07275at 1541.811 kb on - strand, within ABZR87_RS07275at 1541.811 kb on - strand, within ABZR87_RS07275at 1541.811 kb on - strand, within ABZR87_RS07275at 1541.811 kb on - strand, within ABZR87_RS07275at 1541.811 kb on - strand, within ABZR87_RS07275at 1541.822 kb on + strandat 1541.822 kb on + strandat 1541.837 kb on + strandat 1541.837 kb on + strandat 1541.837 kb on + strandat 1541.837 kb on + strandat 1541.837 kb on + strandat 1541.838 kb on - strandat 1541.838 kb on - strandat 1541.838 kb on - strandat 1541.838 kb on - strandat 1541.838 kb on - strandat 1541.873 kb on + strandat 1541.873 kb on + strandat 1541.873 kb on + strandat 1541.873 kb on + strandat 1541.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,539,451 + ABZR87_RS07260 0.62 -2.4
1,539,451 + ABZR87_RS07260 0.62 +0.9
1,539,451 + ABZR87_RS07260 0.62 +0.7
1,539,452 - ABZR87_RS07260 0.62 +0.4
1,539,523 + ABZR87_RS07260 0.90 -0.5
1,539,523 + ABZR87_RS07260 0.90 -0.3
1,539,524 - -0.3
1,539,524 - +0.3
1,539,524 - +0.9
1,539,547 + -0.5
1,539,548 - -0.5
1,539,548 - -0.8
1,539,586 + +0.5
1,539,586 + -0.0
1,539,587 - +0.2
1,539,652 + +1.4
1,539,652 + +0.4
1,539,652 + -0.7
1,539,653 - +0.7
1,539,653 - -0.2
1,539,875 - ABZR87_RS07265 0.35 +0.3
1,539,875 - ABZR87_RS07265 0.35 +0.2
1,540,074 + ABZR87_RS07265 0.61 +0.2
1,540,074 + ABZR87_RS07265 0.61 +0.6
1,540,074 + ABZR87_RS07265 0.61 +0.3
1,540,074 + ABZR87_RS07265 0.61 -0.9
1,540,075 - ABZR87_RS07265 0.61 -0.4
1,540,075 - ABZR87_RS07265 0.61 -0.2
1,540,075 - ABZR87_RS07265 0.61 -1.2
1,540,181 + ABZR87_RS07265 0.75 +0.3
1,540,181 + ABZR87_RS07265 0.75 +0.1
1,540,181 + ABZR87_RS07265 0.75 +0.8
1,540,182 - ABZR87_RS07265 0.75 +0.8
1,540,182 - ABZR87_RS07265 0.75 -0.7
1,540,182 - ABZR87_RS07265 0.75 -0.2
1,540,182 - ABZR87_RS07265 0.75 +1.1
1,540,228 + ABZR87_RS07265 0.81 +0.9
1,540,373 - -0.1
1,540,518 + ABZR87_RS07270 0.22 -0.5
1,540,518 + ABZR87_RS07270 0.22 +0.4
1,540,518 + ABZR87_RS07270 0.22 +0.9
1,540,518 + ABZR87_RS07270 0.22 +0.9
1,540,518 + ABZR87_RS07270 0.22 -0.3
1,540,518 + ABZR87_RS07270 0.22 +0.2
1,540,518 + ABZR87_RS07270 0.22 +2.5
1,540,519 - ABZR87_RS07270 0.22 -0.1
1,540,519 - ABZR87_RS07270 0.22 -0.1
1,540,519 - ABZR87_RS07270 0.22 +0.8
1,540,519 - ABZR87_RS07270 0.22 +1.1
1,540,519 - ABZR87_RS07270 0.22 -0.8
1,540,519 - ABZR87_RS07270 0.22 +0.4
1,540,543 + ABZR87_RS07270 0.26 -2.3
1,540,544 - ABZR87_RS07270 0.26 +0.4
1,540,707 + ABZR87_RS07270 0.55 +0.9
1,540,707 + ABZR87_RS07270 0.55 -0.4
1,540,708 - ABZR87_RS07270 0.55 +0.1
1,540,738 + ABZR87_RS07270 0.60 +0.6
1,540,738 + ABZR87_RS07270 0.60 +0.6
1,540,738 + ABZR87_RS07270 0.60 -0.2
1,540,785 + ABZR87_RS07270 0.68 +0.9
1,540,785 + ABZR87_RS07270 0.68 +0.5
1,540,785 + ABZR87_RS07270 0.68 +1.0
1,540,785 + ABZR87_RS07270 0.68 -0.3
1,540,785 + ABZR87_RS07270 0.68 +1.9
1,540,785 + ABZR87_RS07270 0.68 -0.6
1,540,785 + ABZR87_RS07270 0.68 -0.1
1,540,785 + ABZR87_RS07270 0.68 +2.0
1,540,785 + ABZR87_RS07270 0.68 -1.4
1,540,786 - ABZR87_RS07270 0.68 -0.3
1,540,786 - ABZR87_RS07270 0.68 +1.3
1,540,786 - ABZR87_RS07270 0.68 -0.4
1,540,786 - ABZR87_RS07270 0.68 +0.8
1,540,786 - ABZR87_RS07270 0.68 -0.1
1,540,786 - ABZR87_RS07270 0.68 +0.3
1,540,786 - ABZR87_RS07270 0.68 -0.3
1,540,786 - ABZR87_RS07270 0.68 -0.4
1,540,786 - ABZR87_RS07270 0.68 +0.9
1,540,786 - ABZR87_RS07270 0.68 +0.4
1,540,786 - ABZR87_RS07270 0.68 +0.2
1,540,786 - ABZR87_RS07270 0.68 +0.2
1,540,786 - ABZR87_RS07270 0.68 +0.2
1,540,786 - ABZR87_RS07270 0.68 -0.1
1,540,786 - ABZR87_RS07270 0.68 -1.1
1,540,786 - ABZR87_RS07270 0.68 +0.2
1,540,786 - ABZR87_RS07270 0.68 -0.3
1,540,789 + ABZR87_RS07270 0.69 +0.5
1,540,789 + ABZR87_RS07270 0.69 +0.4
1,540,789 + ABZR87_RS07270 0.69 +0.6
1,540,789 + ABZR87_RS07270 0.69 +0.4
1,540,789 + ABZR87_RS07270 0.69 +0.1
1,540,789 + ABZR87_RS07270 0.69 -0.7
1,540,789 + ABZR87_RS07270 0.69 +1.1
1,540,789 + ABZR87_RS07270 0.69 +0.2
1,540,789 + ABZR87_RS07270 0.69 -0.1
1,540,789 + ABZR87_RS07270 0.69 +0.4
1,540,789 + ABZR87_RS07270 0.69 +0.7
1,540,789 + ABZR87_RS07270 0.69 +0.5
1,540,790 - ABZR87_RS07270 0.69 +0.0
1,540,790 - ABZR87_RS07270 0.69 +0.5
1,540,790 - ABZR87_RS07270 0.69 -0.0
1,540,790 - ABZR87_RS07270 0.69 -0.5
1,540,790 - ABZR87_RS07270 0.69 +1.3
1,540,790 - ABZR87_RS07270 0.69 +1.0
1,540,790 - ABZR87_RS07270 0.69 -0.1
1,540,790 - ABZR87_RS07270 0.69 +1.4
1,540,790 - ABZR87_RS07270 0.69 -0.8
1,540,790 - ABZR87_RS07270 0.69 +0.4
1,540,790 - ABZR87_RS07270 0.69 -0.6
1,540,790 - ABZR87_RS07270 0.69 +0.3
1,540,792 - ABZR87_RS07270 0.69 +0.1
1,540,792 - ABZR87_RS07270 0.69 +0.7
1,540,792 - ABZR87_RS07270 0.69 -0.5
1,540,792 - ABZR87_RS07270 0.69 +0.1
1,540,792 - ABZR87_RS07270 0.69 +0.1
1,540,845 + ABZR87_RS07270 0.78 -0.7
1,540,846 - ABZR87_RS07270 0.79 +0.2
1,540,846 - ABZR87_RS07270 0.79 +1.0
1,540,846 - ABZR87_RS07270 0.79 +0.5
1,540,856 - ABZR87_RS07270 0.80 +0.2
1,540,856 - ABZR87_RS07270 0.80 +0.9
1,541,001 + +0.0
1,541,002 - -0.5
1,541,002 - -0.0
1,541,002 - -0.0
1,541,002 - +0.7
1,541,079 + -0.7
1,541,080 - -0.2
1,541,080 - -0.7
1,541,089 + +0.1
1,541,129 + +1.3
1,541,130 - +1.4
1,541,130 - +0.7
1,541,130 - -0.2
1,541,130 - -0.3
1,541,132 - +0.2
1,541,151 + +0.8
1,541,152 - -0.5
1,541,278 + +0.9
1,541,278 + +1.4
1,541,279 - +1.0
1,541,443 + ABZR87_RS07275 0.25 -0.6
1,541,444 - ABZR87_RS07275 0.25 -2.0
1,541,480 + ABZR87_RS07275 0.31 +0.3
1,541,510 + ABZR87_RS07275 0.37 +0.4
1,541,511 - ABZR87_RS07275 0.37 -0.7
1,541,529 - ABZR87_RS07275 0.40 +0.4
1,541,561 + ABZR87_RS07275 0.45 -0.1
1,541,561 + ABZR87_RS07275 0.45 -0.1
1,541,561 + ABZR87_RS07275 0.45 +0.8
1,541,561 + ABZR87_RS07275 0.45 -0.2
1,541,562 - ABZR87_RS07275 0.46 -1.8
1,541,562 - ABZR87_RS07275 0.46 -1.1
1,541,562 - ABZR87_RS07275 0.46 +2.2
1,541,562 - ABZR87_RS07275 0.46 -0.1
1,541,562 - ABZR87_RS07275 0.46 +0.1
1,541,562 - ABZR87_RS07275 0.46 -0.4
1,541,562 - ABZR87_RS07275 0.46 +0.3
1,541,562 - ABZR87_RS07275 0.46 +0.5
1,541,562 - ABZR87_RS07275 0.46 +0.0
1,541,636 + ABZR87_RS07275 0.58 +0.4
1,541,636 + ABZR87_RS07275 0.58 +0.8
1,541,636 + ABZR87_RS07275 0.58 -0.7
1,541,637 - ABZR87_RS07275 0.58 +2.5
1,541,637 - ABZR87_RS07275 0.58 +0.3
1,541,637 - ABZR87_RS07275 0.58 +1.3
1,541,637 - ABZR87_RS07275 0.58 +0.7
1,541,637 - ABZR87_RS07275 0.58 +1.0
1,541,637 - ABZR87_RS07275 0.58 -0.1
1,541,777 + ABZR87_RS07275 0.82 -0.7
1,541,777 + ABZR87_RS07275 0.82 +0.4
1,541,777 + ABZR87_RS07275 0.82 +0.5
1,541,778 - ABZR87_RS07275 0.83 +0.1
1,541,778 - ABZR87_RS07275 0.83 -0.4
1,541,807 + ABZR87_RS07275 0.88 -0.4
1,541,807 + ABZR87_RS07275 0.88 -0.2
1,541,807 + ABZR87_RS07275 0.88 +0.1
1,541,807 + ABZR87_RS07275 0.88 -0.2
1,541,808 - ABZR87_RS07275 0.88 +0.0
1,541,808 - ABZR87_RS07275 0.88 -0.1
1,541,808 - ABZR87_RS07275 0.88 +0.4
1,541,808 - ABZR87_RS07275 0.88 +0.2
1,541,808 - ABZR87_RS07275 0.88 +0.5
1,541,810 + ABZR87_RS07275 0.88 +0.2
1,541,810 + ABZR87_RS07275 0.88 +0.6
1,541,810 + ABZR87_RS07275 0.88 -1.8
1,541,810 + ABZR87_RS07275 0.88 -0.7
1,541,810 + ABZR87_RS07275 0.88 +0.0
1,541,810 + ABZR87_RS07275 0.88 +0.3
1,541,810 + ABZR87_RS07275 0.88 -0.1
1,541,811 - ABZR87_RS07275 0.88 +0.9
1,541,811 - ABZR87_RS07275 0.88 +0.3
1,541,811 - ABZR87_RS07275 0.88 -0.4
1,541,811 - ABZR87_RS07275 0.88 +0.3
1,541,811 - ABZR87_RS07275 0.88 -0.1
1,541,822 + -0.7
1,541,822 + +1.4
1,541,837 + +0.6
1,541,837 + +0.2
1,541,837 + +0.3
1,541,837 + -0.4
1,541,837 + +0.7
1,541,838 - -0.7
1,541,838 - -1.1
1,541,838 - -0.0
1,541,838 - -0.1
1,541,838 - +0.3
1,541,873 + +0.2
1,541,873 + -0.1
1,541,873 + +0.4
1,541,873 + -1.0
1,541,874 - +0.0

Or see this region's nucleotide sequence