Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07125

Experiment: Protocatechuic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Protocatechuic Acid (C)
1,504,273	+		ABZR87_RS07120	0.74	+0.9
1,504,273	+		ABZR87_RS07120	0.74	-0.9
1,504,273	+		ABZR87_RS07120	0.74	-0.4
1,504,274	-		ABZR87_RS07120	0.74	+1.1
1,504,274	-		ABZR87_RS07120	0.74	+0.3
1,504,274	-		ABZR87_RS07120	0.74	-1.0
1,504,274	-		ABZR87_RS07120	0.74	-0.1
1,504,437	+		ABZR87_RS07120	0.80	+0.3
1,504,438	-		ABZR87_RS07120	0.80	+0.9
1,504,438	-		ABZR87_RS07120	0.80	+0.5
1,504,438	-		ABZR87_RS07120	0.80	+0.3
1,504,662	+		ABZR87_RS07120	0.88	+0.6
1,504,662	+		ABZR87_RS07120	0.88	+0.1
1,504,663	-		ABZR87_RS07120	0.88	+0.6
1,504,663	-		ABZR87_RS07120	0.88	+1.5
1,504,663	-		ABZR87_RS07120	0.88	+0.2
1,504,684	-		ABZR87_RS07120	0.88	-0.7
1,504,698	+		ABZR87_RS07120	0.89	+0.2
1,504,699	-		ABZR87_RS07120	0.89	-0.3
1,504,699	-		ABZR87_RS07120	0.89	+0.0
1,504,839	+				+1.1
1,504,839	+				+0.0
1,504,839	+				+0.8
1,504,840	-				+1.1
1,504,860	+				-0.4
1,504,860	+				+0.3
1,504,881	+				-0.1
1,504,881	+				-0.1
1,504,881	+				+1.5
1,504,881	+				+0.4
1,504,881	+				+0.5
1,504,881	+				-0.5
1,504,882	-				-0.7
1,504,882	-				-0.1
1,504,987	+				-2.4
1,505,094	-				+1.4
1,505,102	+				+0.4
1,505,102	+				-0.7
1,505,103	-				+0.9
1,505,103	-				-0.2
1,505,103	-				-1.0
1,505,103	-				-0.1
1,505,103	-				-0.5
1,505,105	+				-0.0
1,505,106	-				+2.9
1,505,106	-				-0.5
1,505,106	-				+0.2
1,505,106	-				-0.0
1,505,106	-				-0.7
1,505,106	-				-0.4
1,505,106	-				-0.7
1,505,107	+				-1.2
1,505,107	+				+0.0
1,505,107	+				+1.9
1,505,107	+				-0.6
1,505,107	+				+0.4
1,505,108	-				+1.9
1,505,130	-				-0.0
1,505,130	-				-0.1
1,505,130	-				-0.7
1,505,416	+		ABZR87_RS07125	0.13	-1.4
1,505,417	-		ABZR87_RS07125	0.13	+0.1
1,505,440	+		ABZR87_RS07125	0.15	-0.2
1,505,440	+		ABZR87_RS07125	0.15	-3.3
1,505,440	+		ABZR87_RS07125	0.15	-0.5
1,505,440	+		ABZR87_RS07125	0.15	-0.3
1,505,440	+		ABZR87_RS07125	0.15	-0.8
1,505,440	+		ABZR87_RS07125	0.15	-0.2
1,505,440	+		ABZR87_RS07125	0.15	-1.3
1,505,440	+		ABZR87_RS07125	0.15	-0.4
1,505,440	+		ABZR87_RS07125	0.15	-0.7
1,505,441	-		ABZR87_RS07125	0.16	-0.1
1,505,441	-		ABZR87_RS07125	0.16	-1.5
1,505,441	-		ABZR87_RS07125	0.16	-2.5
1,505,441	-		ABZR87_RS07125	0.16	+0.4
1,505,441	-		ABZR87_RS07125	0.16	+0.3
1,505,441	-		ABZR87_RS07125	0.16	+0.3
1,505,441	-		ABZR87_RS07125	0.16	+0.9
1,505,441	-		ABZR87_RS07125	0.16	-0.1
1,505,441	-		ABZR87_RS07125	0.16	-0.8
1,505,441	-		ABZR87_RS07125	0.16	-0.3
1,505,441	-		ABZR87_RS07125	0.16	-1.2
1,505,441	-		ABZR87_RS07125	0.16	-1.9
1,505,441	-		ABZR87_RS07125	0.16	-0.1
1,505,441	-		ABZR87_RS07125	0.16	-0.4
1,505,442	+		ABZR87_RS07125	0.16	-0.3
1,505,442	+		ABZR87_RS07125	0.16	-0.2
1,505,442	+		ABZR87_RS07125	0.16	-1.4
1,505,443	-		ABZR87_RS07125	0.16	-0.1
1,505,736	+		ABZR87_RS07125	0.41	+0.9
1,505,736	+		ABZR87_RS07125	0.41	+0.2
1,505,737	-		ABZR87_RS07125	0.41	+0.8
1,505,737	-		ABZR87_RS07125	0.41	+0.2
1,505,944	-		ABZR87_RS07125	0.59	+0.2
1,505,944	-		ABZR87_RS07125	0.59	+0.1
1,505,944	-		ABZR87_RS07125	0.59	-0.7
1,505,989	+		ABZR87_RS07125	0.63	-0.8
1,505,989	+		ABZR87_RS07125	0.63	-0.3
1,505,989	+		ABZR87_RS07125	0.63	-1.2
1,505,990	-		ABZR87_RS07125	0.63	-0.7
1,506,166	+		ABZR87_RS07125	0.78	-0.1
1,506,167	-		ABZR87_RS07125	0.78	-2.1
1,506,167	-		ABZR87_RS07125	0.78	+0.2
1,506,167	-		ABZR87_RS07125	0.78	-1.5
1,506,220	+		ABZR87_RS07125	0.82	-0.4
1,506,221	-		ABZR87_RS07125	0.83	-0.6
1,506,221	-		ABZR87_RS07125	0.83	-0.6
1,506,259	+		ABZR87_RS07125	0.86	-0.5
1,506,259	+		ABZR87_RS07125	0.86	-0.0
1,506,259	+		ABZR87_RS07125	0.86	-0.6
1,506,260	-		ABZR87_RS07125	0.86	+0.3
1,506,260	-		ABZR87_RS07125	0.86	-1.0
1,506,260	-		ABZR87_RS07125	0.86	-0.5
1,506,341	+				-1.2
1,506,378	+				+0.0
1,506,378	+				-0.3
1,506,378	+				-0.1
1,506,379	-				+0.7
1,506,379	-				+0.2
1,506,379	-				-0.1
1,506,380	+				-1.1
1,506,421	+				-0.5
1,506,494	+				+1.7
1,507,059	-				+1.5
1,507,072	-				-0.3
1,507,072	-				-0.4
1,507,072	-				+1.2
1,507,121	+				+0.6
1,507,122	-				+0.5
1,507,131	+				+0.2
1,507,132	-				+1.1
1,507,143	-				-1.5
1,507,143	-				-0.5
1,507,161	+				+0.2
1,507,161	+				+0.7
1,507,162	-				-0.4
1,507,162	-				+0.9
1,507,173	+				+1.2
1,507,173	+				+0.0
1,507,173	+				+0.4
1,507,239	+				+0.6
1,507,254	+				+0.5
1,507,344	+		ABZR87_RS07135	0.11	-1.5
1,507,393	+		ABZR87_RS07135	0.14	+1.4
1,507,393	+		ABZR87_RS07135	0.14	+1.9
1,507,393	+		ABZR87_RS07135	0.14	+0.2
1,507,394	-		ABZR87_RS07135	0.14	-0.7
1,507,394	-		ABZR87_RS07135	0.14	+3.7
1,507,394	-		ABZR87_RS07135	0.14	+0.7
1,507,395	+		ABZR87_RS07135	0.14	-0.1
1,507,395	+		ABZR87_RS07135	0.14	+0.8
1,507,395	+		ABZR87_RS07135	0.14	-1.9
1,507,395	+		ABZR87_RS07135	0.14	+0.3
1,507,395	+		ABZR87_RS07135	0.14	+0.9
1,507,395	+		ABZR87_RS07135	0.14	-0.2
1,507,395	+		ABZR87_RS07135	0.14	+0.2
1,507,395	+		ABZR87_RS07135	0.14	+0.3
1,507,396	-		ABZR87_RS07135	0.14	-0.6
1,507,396	-		ABZR87_RS07135	0.14	-1.0
1,507,396	-		ABZR87_RS07135	0.14	+0.6
1,507,396	-		ABZR87_RS07135	0.14	+0.5
1,507,396	-		ABZR87_RS07135	0.14	-0.2
1,507,396	-		ABZR87_RS07135	0.14	-0.7
1,507,396	-		ABZR87_RS07135	0.14	-0.0
1,507,396	-		ABZR87_RS07135	0.14	-0.5
1,507,396	-		ABZR87_RS07135	0.14	+0.6
1,507,396	-		ABZR87_RS07135	0.14	-0.3
1,507,396	-		ABZR87_RS07135	0.14	-0.4
1,507,396	-		ABZR87_RS07135	0.14	-0.4
1,507,396	-		ABZR87_RS07135	0.14	+0.6
1,507,422	+		ABZR87_RS07135	0.16	+0.3
1,507,422	+		ABZR87_RS07135	0.16	-0.1
1,507,422	+		ABZR87_RS07135	0.16	+1.3
1,507,422	+		ABZR87_RS07135	0.16	-2.1
1,507,423	-		ABZR87_RS07135	0.16	-1.3
1,507,423	-		ABZR87_RS07135	0.16	+0.2
1,507,423	-		ABZR87_RS07135	0.16	-0.1
1,507,423	-		ABZR87_RS07135	0.16	-0.2
1,507,423	-		ABZR87_RS07135	0.16	-0.5
1,507,423	-		ABZR87_RS07135	0.16	+0.0