Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05370 and ABZR87_RS05375 are separated by 62 nucleotides ABZR87_RS05375 and ABZR87_RS05380 are separated by 629 nucleotides ABZR87_RS05380 and ABZR87_RS05385 are separated by 276 nucleotides
ABZR87_RS05370: ABZR87_RS05370 - ribonuclease P protein component, at 1,130,390 to 1,130,812
_RS05370
ABZR87_RS05375: ABZR87_RS05375 - 50S ribosomal protein L34, at 1,130,875 to 1,131,009
_RS05375
ABZR87_RS05380: ABZR87_RS05380 - chromosomal replication initiator protein DnaA, at 1,131,639 to 1,133,228
_RS05380
ABZR87_RS05385: ABZR87_RS05385 - DNA polymerase III subunit beta, at 1,133,505 to 1,134,620
_RS05385
Position (kb)
1131
1132
1133
1134 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1130.876 kb on + strand at 1130.876 kb on + strand at 1130.876 kb on + strand at 1130.876 kb on + strand at 1130.876 kb on + strand at 1131.129 kb on - strand at 1131.129 kb on - strand at 1131.129 kb on - strand at 1131.129 kb on - strand at 1131.144 kb on - strand at 1131.144 kb on - strand at 1131.144 kb on - strand at 1131.144 kb on - strand at 1131.433 kb on + strand at 1131.453 kb on + strand at 1131.454 kb on - strand at 1131.454 kb on - strand at 1131.487 kb on + strand at 1131.501 kb on - strand at 1131.517 kb on + strand at 1131.518 kb on - strand at 1131.518 kb on - strand at 1131.518 kb on - strand at 1131.628 kb on + strand at 1131.628 kb on + strand at 1131.628 kb on + strand at 1133.325 kb on + strand at 1133.325 kb on + strand at 1133.325 kb on + strand at 1133.325 kb on + strand at 1133.326 kb on - strand at 1133.331 kb on + strand at 1133.331 kb on + strand at 1133.331 kb on + strand at 1133.331 kb on + strand at 1133.331 kb on + strand at 1133.331 kb on + strand at 1133.331 kb on + strand at 1133.331 kb on + strand at 1133.331 kb on + strand at 1133.331 kb on + strand at 1133.332 kb on - strand at 1133.332 kb on - strand at 1133.332 kb on - strand at 1133.332 kb on - strand at 1133.332 kb on - strand at 1133.332 kb on - strand at 1133.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 1,130,876 + -0.7 1,130,876 + -0.1 1,130,876 + -0.9 1,130,876 + -0.0 1,130,876 + +0.1 1,131,129 - -2.5 1,131,129 - -0.9 1,131,129 - -0.6 1,131,129 - +0.5 1,131,144 - -0.8 1,131,144 - +0.2 1,131,144 - -0.5 1,131,144 - -0.1 1,131,433 + +1.0 1,131,453 + +1.4 1,131,454 - +0.9 1,131,454 - +0.1 1,131,487 + -0.0 1,131,501 - +0.0 1,131,517 + +0.1 1,131,518 - -1.1 1,131,518 - +0.0 1,131,518 - -1.2 1,131,628 + +1.6 1,131,628 + +0.3 1,131,628 + +2.1 1,133,325 + +1.1 1,133,325 + +0.6 1,133,325 + +0.6 1,133,325 + +0.9 1,133,326 - +1.1 1,133,331 + +0.3 1,133,331 + -0.9 1,133,331 + +1.0 1,133,331 + +0.9 1,133,331 + +0.7 1,133,331 + +0.8 1,133,331 + +1.1 1,133,331 + +2.1 1,133,331 + +1.0 1,133,331 + +0.4 1,133,332 - -2.3 1,133,332 - -1.4 1,133,332 - -1.9 1,133,332 - -2.0 1,133,332 - +0.1 1,133,332 - -1.5 1,133,332 - -1.9
Or see this region's nucleotide sequence