Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05080

Experiment: Protocatechuic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Protocatechuic Acid (C)
1,068,924	+		ABZR87_RS05070	0.80	-0.1
1,068,924	+		ABZR87_RS05070	0.80	+0.1
1,068,925	-		ABZR87_RS05070	0.80	-0.4
1,068,925	-		ABZR87_RS05070	0.80	-0.2
1,068,984	+		ABZR87_RS05070	0.85	+0.8
1,068,984	+		ABZR87_RS05070	0.85	+0.7
1,068,984	+		ABZR87_RS05070	0.85	-1.1
1,068,984	+		ABZR87_RS05070	0.85	-0.5
1,068,984	+		ABZR87_RS05070	0.85	+1.5
1,068,984	+		ABZR87_RS05070	0.85	-0.8
1,068,984	+		ABZR87_RS05070	0.85	-0.2
1,068,984	+		ABZR87_RS05070	0.85	+0.1
1,068,984	+		ABZR87_RS05070	0.85	-0.6
1,068,985	-		ABZR87_RS05070	0.85	-1.3
1,068,985	-		ABZR87_RS05070	0.85	+0.0
1,068,985	-		ABZR87_RS05070	0.85	+1.1
1,069,131	+				+0.9
1,069,132	-				+0.9
1,069,132	-				+0.1
1,069,161	+				+0.0
1,069,494	+		ABZR87_RS05075	0.49	+1.0
1,069,494	+		ABZR87_RS05075	0.49	-0.0
1,069,494	+		ABZR87_RS05075	0.49	+1.3
1,069,495	-		ABZR87_RS05075	0.49	+0.1
1,069,495	-		ABZR87_RS05075	0.49	+0.4
1,069,808	+				+0.1
1,069,808	+				+0.1
1,069,808	+				-0.7
1,069,808	+				+1.3
1,069,809	-				-0.5
1,069,809	-				-0.5
1,069,809	-				-1.9
1,069,809	-				-1.2
1,069,926	+				+0.4
1,069,927	-				+1.0
1,069,927	-				+0.5
1,069,927	-				-0.2
1,069,927	-				+0.1
1,070,088	+		ABZR87_RS05080	0.13	+0.3
1,070,088	+		ABZR87_RS05080	0.13	-0.1
1,070,089	-		ABZR87_RS05080	0.13	-0.9
1,070,089	-		ABZR87_RS05080	0.13	+0.7
1,070,089	-		ABZR87_RS05080	0.13	+0.3
1,070,089	-		ABZR87_RS05080	0.13	-0.3
1,070,089	-		ABZR87_RS05080	0.13	-0.4
1,070,212	-		ABZR87_RS05080	0.21	-1.0
1,070,223	+		ABZR87_RS05080	0.22	-0.7
1,070,223	+		ABZR87_RS05080	0.22	-0.3
1,070,223	+		ABZR87_RS05080	0.22	+0.1
1,070,223	+		ABZR87_RS05080	0.22	-0.0
1,070,224	-		ABZR87_RS05080	0.22	+0.7
1,070,224	-		ABZR87_RS05080	0.22	-1.0
1,070,224	-		ABZR87_RS05080	0.22	+1.1
1,070,224	-		ABZR87_RS05080	0.22	-1.1
1,070,224	-		ABZR87_RS05080	0.22	+0.1
1,070,224	-		ABZR87_RS05080	0.22	-0.7
1,070,224	-		ABZR87_RS05080	0.22	+0.1
1,070,224	-		ABZR87_RS05080	0.22	+0.1
1,070,224	-		ABZR87_RS05080	0.22	+0.4
1,070,263	-		ABZR87_RS05080	0.24	+0.7
1,070,263	-		ABZR87_RS05080	0.24	+0.3
1,070,263	-		ABZR87_RS05080	0.24	+0.1
1,070,285	+		ABZR87_RS05080	0.26	+0.4
1,070,286	-		ABZR87_RS05080	0.26	+0.2
1,070,286	-		ABZR87_RS05080	0.26	+0.8
1,070,479	-		ABZR87_RS05080	0.38	-0.1
1,070,479	-		ABZR87_RS05080	0.38	-0.1
1,070,586	+		ABZR87_RS05080	0.45	-1.3
1,070,587	-		ABZR87_RS05080	0.45	-0.4
1,070,587	-		ABZR87_RS05080	0.45	-0.7
1,070,587	-		ABZR87_RS05080	0.45	+1.1
1,070,587	-		ABZR87_RS05080	0.45	+0.9
1,070,595	+		ABZR87_RS05080	0.46	+0.4
1,070,596	-		ABZR87_RS05080	0.46	+0.3
1,070,865	+		ABZR87_RS05080	0.64	-1.1
1,070,865	+		ABZR87_RS05080	0.64	-0.3
1,070,866	-		ABZR87_RS05080	0.64	+0.1
1,070,866	-		ABZR87_RS05080	0.64	-0.3
1,070,889	+		ABZR87_RS05080	0.65	+0.1
1,070,890	-		ABZR87_RS05080	0.65	-0.4
1,070,890	-		ABZR87_RS05080	0.65	+0.3
1,070,925	+		ABZR87_RS05080	0.68	-0.9
1,070,925	+		ABZR87_RS05080	0.68	-0.2
1,070,925	+		ABZR87_RS05080	0.68	-0.2
1,070,926	-		ABZR87_RS05080	0.68	+0.0
1,070,926	-		ABZR87_RS05080	0.68	+0.6
1,070,926	-		ABZR87_RS05080	0.68	-0.8
1,070,926	-		ABZR87_RS05080	0.68	-0.4
1,070,926	-		ABZR87_RS05080	0.68	+0.3
1,070,926	-		ABZR87_RS05080	0.68	+0.1
1,070,937	+		ABZR87_RS05080	0.68	+0.3
1,070,937	+		ABZR87_RS05080	0.68	+1.9
1,070,937	+		ABZR87_RS05080	0.68	+0.4
1,070,938	-		ABZR87_RS05080	0.68	+0.7
1,070,938	-		ABZR87_RS05080	0.68	-1.0
1,070,938	-		ABZR87_RS05080	0.68	+1.0
1,070,938	-		ABZR87_RS05080	0.68	-0.4
1,070,979	+		ABZR87_RS05080	0.71	+0.3
1,070,979	+		ABZR87_RS05080	0.71	-0.0
1,070,979	+		ABZR87_RS05080	0.71	-1.7
1,070,979	+		ABZR87_RS05080	0.71	-0.7
1,070,979	+		ABZR87_RS05080	0.71	-0.1
1,070,979	+		ABZR87_RS05080	0.71	+0.4
1,070,979	+		ABZR87_RS05080	0.71	-0.4
1,070,979	+		ABZR87_RS05080	0.71	-0.9
1,070,980	-		ABZR87_RS05080	0.71	-0.1
1,070,980	-		ABZR87_RS05080	0.71	-1.5
1,070,980	-		ABZR87_RS05080	0.71	+0.1
1,070,980	-		ABZR87_RS05080	0.71	-1.3
1,070,980	-		ABZR87_RS05080	0.71	-0.6
1,070,980	-		ABZR87_RS05080	0.71	+1.5
1,070,980	-		ABZR87_RS05080	0.71	-0.6
1,070,980	-		ABZR87_RS05080	0.71	-1.0
1,070,980	-		ABZR87_RS05080	0.71	-0.3
1,070,980	-		ABZR87_RS05080	0.71	+0.5
1,070,980	-		ABZR87_RS05080	0.71	-1.1
1,070,980	-		ABZR87_RS05080	0.71	+1.0
1,070,980	-		ABZR87_RS05080	0.71	+0.1
1,071,045	+		ABZR87_RS05080	0.75	-0.9
1,071,046	-		ABZR87_RS05080	0.76	+0.3
1,071,123	+		ABZR87_RS05080	0.81	+0.3
1,071,123	+		ABZR87_RS05080	0.81	+1.0
1,071,123	+		ABZR87_RS05080	0.81	-0.3
1,071,124	-		ABZR87_RS05080	0.81	-0.4
1,071,132	+		ABZR87_RS05080	0.81	+0.2
1,071,132	+		ABZR87_RS05080	0.81	+0.4
1,071,132	+		ABZR87_RS05080	0.81	+0.1
1,071,133	-		ABZR87_RS05080	0.81	+1.4
1,071,133	-		ABZR87_RS05080	0.81	+0.4
1,071,133	-		ABZR87_RS05080	0.81	-0.3
1,071,133	-		ABZR87_RS05080	0.81	+0.4
1,071,187	-		ABZR87_RS05080	0.85	+0.8
1,071,240	+		ABZR87_RS05080	0.88	+0.1
1,071,240	+		ABZR87_RS05080	0.88	-0.3
1,071,241	-		ABZR87_RS05080	0.88	+0.6
1,071,267	+				-0.3
1,071,267	+				+0.1
1,071,267	+				-1.4
1,071,267	+				+1.7
1,071,267	+				-0.5
1,071,267	+				+0.6
1,071,268	-				+0.0
1,071,268	-				-0.2
1,071,268	-				+0.1
1,071,268	-				-0.0
1,071,268	-				-1.2
1,071,276	+				+0.0
1,071,276	+				-0.6
1,071,276	+				-0.2
1,071,321	+				+0.2
1,071,322	-				+0.5
1,071,324	+				-2.2
1,071,324	+				+0.9
1,071,325	-				+0.6
1,071,325	-				+0.1
1,071,342	+				-0.8
1,071,342	+				+1.1
1,071,343	-				-0.2
1,071,343	-				-0.6
1,071,373	-				-0.4
1,071,473	+				+1.6
1,071,474	-				-0.7
1,071,585	+		ABZR87_RS05085	0.12	-0.4
1,071,586	-		ABZR87_RS05085	0.12	-0.2
1,071,586	-		ABZR87_RS05085	0.12	-1.7
1,071,586	-		ABZR87_RS05085	0.12	+1.8
1,071,597	+		ABZR87_RS05085	0.13	+0.0
1,071,597	+		ABZR87_RS05085	0.13	+2.0
1,071,597	+		ABZR87_RS05085	0.13	-0.3
1,071,597	+		ABZR87_RS05085	0.13	+0.7
1,071,597	+		ABZR87_RS05085	0.13	-1.3
1,071,598	-		ABZR87_RS05085	0.13	-0.2
1,071,598	-		ABZR87_RS05085	0.13	-0.2
1,071,598	-		ABZR87_RS05085	0.13	-0.7
1,071,598	-		ABZR87_RS05085	0.13	-0.2
1,071,651	+		ABZR87_RS05085	0.18	-0.4
1,071,651	+		ABZR87_RS05085	0.18	+0.6
1,071,651	+		ABZR87_RS05085	0.18	+0.2
1,071,651	+		ABZR87_RS05085	0.18	+0.5
1,071,651	+		ABZR87_RS05085	0.18	+0.5
1,071,651	+		ABZR87_RS05085	0.18	-0.5
1,071,651	+		ABZR87_RS05085	0.18	+0.7
1,071,651	+		ABZR87_RS05085	0.18	+0.2
1,071,651	+		ABZR87_RS05085	0.18	+1.8
1,071,651	+		ABZR87_RS05085	0.18	-0.9
1,071,651	+		ABZR87_RS05085	0.18	+1.1
1,071,651	+		ABZR87_RS05085	0.18	+1.0
1,071,651	+		ABZR87_RS05085	0.18	+1.1
1,071,652	-		ABZR87_RS05085	0.18	+0.6
1,071,652	-		ABZR87_RS05085	0.18	-0.8
1,071,652	-		ABZR87_RS05085	0.18	+0.6
1,071,652	-		ABZR87_RS05085	0.18	+1.1
1,071,652	-		ABZR87_RS05085	0.18	-0.4
1,071,652	-		ABZR87_RS05085	0.18	+0.8
1,071,652	-		ABZR87_RS05085	0.18	+0.5
1,071,652	-		ABZR87_RS05085	0.18	+1.7
1,071,652	-		ABZR87_RS05085	0.18	-0.4
1,071,652	-		ABZR87_RS05085	0.18	+0.1
1,071,750	+		ABZR87_RS05085	0.26	-0.2
1,071,751	-		ABZR87_RS05085	0.26	-0.7
1,071,774	+		ABZR87_RS05085	0.28	+1.1
1,071,774	+		ABZR87_RS05085	0.28	+0.1
1,071,774	+		ABZR87_RS05085	0.28	-1.2
1,071,774	+		ABZR87_RS05085	0.28	+1.7
1,071,774	+		ABZR87_RS05085	0.28	-0.6
1,071,774	+		ABZR87_RS05085	0.28	-0.1
1,071,774	+		ABZR87_RS05085	0.28	-0.7
1,071,775	-		ABZR87_RS05085	0.28	-0.9
1,071,775	-		ABZR87_RS05085	0.28	+0.3
1,071,775	-		ABZR87_RS05085	0.28	+0.3
1,071,775	-		ABZR87_RS05085	0.28	+0.7
1,071,775	-		ABZR87_RS05085	0.28	+1.4
1,071,775	-		ABZR87_RS05085	0.28	+0.3
1,071,775	-		ABZR87_RS05085	0.28	-0.4
1,071,807	+		ABZR87_RS05085	0.30	-0.7
1,071,807	+		ABZR87_RS05085	0.30	+0.6
1,071,808	-		ABZR87_RS05085	0.30	-0.8
1,071,808	-		ABZR87_RS05085	0.30	-1.0
1,071,930	+		ABZR87_RS05085	0.40	-2.2
1,071,930	+		ABZR87_RS05085	0.40	+0.0
1,071,931	-		ABZR87_RS05085	0.40	+1.1
1,071,931	-		ABZR87_RS05085	0.40	-0.1
1,071,946	-		ABZR87_RS05085	0.41	+0.1
1,071,946	-		ABZR87_RS05085	0.41	+0.0
1,071,946	-		ABZR87_RS05085	0.41	+0.6
1,071,946	-		ABZR87_RS05085	0.41	-0.2
1,071,946	-		ABZR87_RS05085	0.41	+0.2
1,072,224	+		ABZR87_RS05085	0.64	-0.7
1,072,224	+		ABZR87_RS05085	0.64	-0.6
1,072,225	-		ABZR87_RS05085	0.64	+0.0
1,072,225	-		ABZR87_RS05085	0.64	+0.2
1,072,225	-		ABZR87_RS05085	0.64	-0.3
1,072,267	-		ABZR87_RS05085	0.67	+0.1
1,072,267	-		ABZR87_RS05085	0.67	-0.8
1,072,329	+		ABZR87_RS05085	0.72	+0.3
1,072,330	-		ABZR87_RS05085	0.72	+0.1
1,072,386	+		ABZR87_RS05085	0.77	-0.6
1,072,386	+		ABZR87_RS05085	0.77	-2.9
1,072,387	-		ABZR87_RS05085	0.77	-0.1