Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03200

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03195 and ABZR87_RS03200 are separated by 238 nucleotidesABZR87_RS03200 and ABZR87_RS03205 are separated by 4 nucleotides ABZR87_RS03195: ABZR87_RS03195 - cation diffusion facilitator family transporter, at 670,571 to 671,719 _RS03195 ABZR87_RS03200: ABZR87_RS03200 - response regulator transcription factor, at 671,958 to 672,623 _RS03200 ABZR87_RS03205: ABZR87_RS03205 - transporter substrate-binding domain-containing protein, at 672,628 to 676,935 _RS03205 Position (kb) 671 672 673Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 671.166 kb on + strand, within ABZR87_RS03195at 671.166 kb on + strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.289 kb on + strand, within ABZR87_RS03195at 671.289 kb on + strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.476 kb on - strand, within ABZR87_RS03195at 671.476 kb on - strand, within ABZR87_RS03195at 671.476 kb on - strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.860 kb on + strandat 671.860 kb on + strandat 671.863 kb on + strandat 671.864 kb on - strandat 671.936 kb on + strandat 671.936 kb on + strandat 671.936 kb on + strandat 671.936 kb on + strandat 671.937 kb on - strandat 671.937 kb on - strandat 671.937 kb on - strandat 671.937 kb on - strandat 672.130 kb on - strand, within ABZR87_RS03200at 672.130 kb on - strand, within ABZR87_RS03200at 672.345 kb on + strand, within ABZR87_RS03200at 672.345 kb on + strand, within ABZR87_RS03200at 672.346 kb on - strand, within ABZR87_RS03200at 672.346 kb on - strand, within ABZR87_RS03200at 672.346 kb on - strand, within ABZR87_RS03200at 672.346 kb on - strand, within ABZR87_RS03200at 672.456 kb on + strand, within ABZR87_RS03200at 672.456 kb on + strand, within ABZR87_RS03200at 672.456 kb on + strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.739 kb on + strandat 672.739 kb on + strandat 672.739 kb on + strandat 672.739 kb on + strandat 672.740 kb on - strandat 672.740 kb on - strandat 672.740 kb on - strandat 672.740 kb on - strandat 672.740 kb on - strandat 672.979 kb on + strandat 672.980 kb on - strandat 672.980 kb on - strandat 672.980 kb on - strandat 672.980 kb on - strandat 672.980 kb on - strandat 672.980 kb on - strandat 672.980 kb on - strandat 672.998 kb on - strandat 673.009 kb on + strandat 673.216 kb on + strand, within ABZR87_RS03205at 673.216 kb on + strand, within ABZR87_RS03205at 673.216 kb on + strand, within ABZR87_RS03205at 673.217 kb on - strand, within ABZR87_RS03205at 673.217 kb on - strand, within ABZR87_RS03205at 673.217 kb on - strand, within ABZR87_RS03205at 673.217 kb on - strand, within ABZR87_RS03205at 673.217 kb on - strand, within ABZR87_RS03205at 673.226 kb on + strand, within ABZR87_RS03205at 673.226 kb on + strand, within ABZR87_RS03205at 673.226 kb on + strand, within ABZR87_RS03205at 673.226 kb on + strand, within ABZR87_RS03205at 673.227 kb on - strand, within ABZR87_RS03205at 673.227 kb on - strand, within ABZR87_RS03205at 673.227 kb on - strand, within ABZR87_RS03205at 673.227 kb on - strand, within ABZR87_RS03205at 673.227 kb on - strand, within ABZR87_RS03205at 673.231 kb on + strand, within ABZR87_RS03205at 673.231 kb on + strand, within ABZR87_RS03205at 673.232 kb on - strand, within ABZR87_RS03205at 673.232 kb on - strand, within ABZR87_RS03205at 673.232 kb on - strand, within ABZR87_RS03205at 673.274 kb on + strand, within ABZR87_RS03205at 673.275 kb on - strand, within ABZR87_RS03205at 673.275 kb on - strand, within ABZR87_RS03205at 673.275 kb on - strand, within ABZR87_RS03205at 673.431 kb on + strand, within ABZR87_RS03205at 673.519 kb on + strand, within ABZR87_RS03205at 673.519 kb on + strand, within ABZR87_RS03205at 673.519 kb on + strand, within ABZR87_RS03205at 673.519 kb on + strand, within ABZR87_RS03205at 673.519 kb on + strand, within ABZR87_RS03205at 673.520 kb on - strand, within ABZR87_RS03205at 673.520 kb on - strand, within ABZR87_RS03205at 673.520 kb on - strand, within ABZR87_RS03205at 673.520 kb on - strand, within ABZR87_RS03205at 673.528 kb on + strand, within ABZR87_RS03205at 673.529 kb on - strand, within ABZR87_RS03205at 673.576 kb on + strand, within ABZR87_RS03205at 673.577 kb on - strand, within ABZR87_RS03205

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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671,166 + ABZR87_RS03195 0.52 -2.5
671,166 + ABZR87_RS03195 0.52 -2.0
671,167 - ABZR87_RS03195 0.52 -0.2
671,167 - ABZR87_RS03195 0.52 +0.4
671,167 - ABZR87_RS03195 0.52 -0.8
671,167 - ABZR87_RS03195 0.52 -1.1
671,289 + ABZR87_RS03195 0.62 -0.7
671,289 + ABZR87_RS03195 0.62 -1.3
671,290 - ABZR87_RS03195 0.63 -1.5
671,290 - ABZR87_RS03195 0.63 -0.4
671,290 - ABZR87_RS03195 0.63 -1.0
671,290 - ABZR87_RS03195 0.63 -1.5
671,290 - ABZR87_RS03195 0.63 -1.4
671,476 - ABZR87_RS03195 0.79 -2.3
671,476 - ABZR87_RS03195 0.79 -0.6
671,476 - ABZR87_RS03195 0.79 -1.0
671,557 + ABZR87_RS03195 0.86 -1.1
671,557 + ABZR87_RS03195 0.86 -3.5
671,557 + ABZR87_RS03195 0.86 -2.0
671,557 + ABZR87_RS03195 0.86 -0.4
671,557 + ABZR87_RS03195 0.86 -1.5
671,557 + ABZR87_RS03195 0.86 -1.2
671,557 + ABZR87_RS03195 0.86 -1.5
671,557 + ABZR87_RS03195 0.86 -0.7
671,558 - ABZR87_RS03195 0.86 -1.8
671,558 - ABZR87_RS03195 0.86 -1.2
671,558 - ABZR87_RS03195 0.86 -2.0
671,558 - ABZR87_RS03195 0.86 -0.8
671,558 - ABZR87_RS03195 0.86 -1.7
671,558 - ABZR87_RS03195 0.86 -2.4
671,558 - ABZR87_RS03195 0.86 -0.2
671,558 - ABZR87_RS03195 0.86 -1.3
671,860 + +0.3
671,860 + +0.2
671,863 + +0.3
671,864 - +0.7
671,936 + +0.5
671,936 + +1.1
671,936 + +1.3
671,936 + +0.6
671,937 - +1.0
671,937 - +1.1
671,937 - +0.9
671,937 - +0.9
672,130 - ABZR87_RS03200 0.26 +0.4
672,130 - ABZR87_RS03200 0.26 +0.6
672,345 + ABZR87_RS03200 0.58 +1.6
672,345 + ABZR87_RS03200 0.58 -0.2
672,346 - ABZR87_RS03200 0.58 -0.6
672,346 - ABZR87_RS03200 0.58 +0.2
672,346 - ABZR87_RS03200 0.58 -0.4
672,346 - ABZR87_RS03200 0.58 +0.2
672,456 + ABZR87_RS03200 0.75 +0.7
672,456 + ABZR87_RS03200 0.75 +0.6
672,456 + ABZR87_RS03200 0.75 +1.4
672,457 - ABZR87_RS03200 0.75 -0.1
672,457 - ABZR87_RS03200 0.75 +0.2
672,457 - ABZR87_RS03200 0.75 +1.2
672,457 - ABZR87_RS03200 0.75 +1.9
672,457 - ABZR87_RS03200 0.75 +1.2
672,457 - ABZR87_RS03200 0.75 +1.7
672,457 - ABZR87_RS03200 0.75 +0.2
672,739 + -0.8
672,739 + +0.6
672,739 + +0.8
672,739 + -0.5
672,740 - -0.3
672,740 - +2.0
672,740 - +1.0
672,740 - -0.2
672,740 - +1.0
672,979 + +1.4
672,980 - +0.4
672,980 - +0.4
672,980 - +1.2
672,980 - +0.1
672,980 - +1.3
672,980 - +0.3
672,980 - +0.9
672,998 - -0.5
673,009 + -0.1
673,216 + ABZR87_RS03205 0.14 +0.5
673,216 + ABZR87_RS03205 0.14 +0.2
673,216 + ABZR87_RS03205 0.14 +0.5
673,217 - ABZR87_RS03205 0.14 +0.9
673,217 - ABZR87_RS03205 0.14 +1.6
673,217 - ABZR87_RS03205 0.14 +0.2
673,217 - ABZR87_RS03205 0.14 +0.0
673,217 - ABZR87_RS03205 0.14 +1.2
673,226 + ABZR87_RS03205 0.14 +0.1
673,226 + ABZR87_RS03205 0.14 -0.7
673,226 + ABZR87_RS03205 0.14 +2.2
673,226 + ABZR87_RS03205 0.14 -0.7
673,227 - ABZR87_RS03205 0.14 +0.1
673,227 - ABZR87_RS03205 0.14 +0.6
673,227 - ABZR87_RS03205 0.14 -0.3
673,227 - ABZR87_RS03205 0.14 +0.1
673,227 - ABZR87_RS03205 0.14 +1.2
673,231 + ABZR87_RS03205 0.14 +0.4
673,231 + ABZR87_RS03205 0.14 -0.2
673,232 - ABZR87_RS03205 0.14 +0.2
673,232 - ABZR87_RS03205 0.14 +0.6
673,232 - ABZR87_RS03205 0.14 -0.3
673,274 + ABZR87_RS03205 0.15 +1.1
673,275 - ABZR87_RS03205 0.15 +1.9
673,275 - ABZR87_RS03205 0.15 -0.5
673,275 - ABZR87_RS03205 0.15 -0.2
673,431 + ABZR87_RS03205 0.19 +1.2
673,519 + ABZR87_RS03205 0.21 +0.5
673,519 + ABZR87_RS03205 0.21 -0.1
673,519 + ABZR87_RS03205 0.21 +0.2
673,519 + ABZR87_RS03205 0.21 -0.1
673,519 + ABZR87_RS03205 0.21 +0.2
673,520 - ABZR87_RS03205 0.21 -0.4
673,520 - ABZR87_RS03205 0.21 -1.8
673,520 - ABZR87_RS03205 0.21 +0.2
673,520 - ABZR87_RS03205 0.21 +0.6
673,528 + ABZR87_RS03205 0.21 +0.6
673,529 - ABZR87_RS03205 0.21 +0.2
673,576 + ABZR87_RS03205 0.22 +1.0
673,577 - ABZR87_RS03205 0.22 +0.4

Or see this region's nucleotide sequence