Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02230

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02225 and ABZR87_RS02230 are separated by 26 nucleotidesABZR87_RS02230 and ABZR87_RS02235 are separated by 25 nucleotides ABZR87_RS02225: ABZR87_RS02225 - ATP-binding protein, at 476,580 to 478,868 _RS02225 ABZR87_RS02230: ABZR87_RS02230 - response regulator, at 478,895 to 479,362 _RS02230 ABZR87_RS02235: ABZR87_RS02235 - response regulator, at 479,388 to 481,346 _RS02235 Position (kb) 478 479 480Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 478.069 kb on - strand, within ABZR87_RS02225at 478.069 kb on - strand, within ABZR87_RS02225at 478.165 kb on - strand, within ABZR87_RS02225at 478.390 kb on + strand, within ABZR87_RS02225at 478.391 kb on - strand, within ABZR87_RS02225at 478.530 kb on + strand, within ABZR87_RS02225at 478.530 kb on + strand, within ABZR87_RS02225at 478.563 kb on - strand, within ABZR87_RS02225at 478.635 kb on + strand, within ABZR87_RS02225at 478.636 kb on - strand, within ABZR87_RS02225at 478.636 kb on - strand, within ABZR87_RS02225at 478.639 kb on + strand, within ABZR87_RS02225at 478.639 kb on + strand, within ABZR87_RS02225at 478.639 kb on + strand, within ABZR87_RS02225at 478.639 kb on + strand, within ABZR87_RS02225at 478.639 kb on + strand, within ABZR87_RS02225at 478.639 kb on + strand, within ABZR87_RS02225at 478.639 kb on + strand, within ABZR87_RS02225at 478.640 kb on - strandat 478.640 kb on - strandat 478.640 kb on - strandat 478.640 kb on - strandat 478.640 kb on - strandat 478.643 kb on + strandat 478.643 kb on + strandat 478.643 kb on + strandat 478.643 kb on + strandat 478.643 kb on + strandat 478.643 kb on + strandat 478.643 kb on + strandat 478.643 kb on + strandat 478.643 kb on + strandat 478.643 kb on + strandat 478.644 kb on - strandat 478.644 kb on - strandat 478.644 kb on - strandat 478.644 kb on - strandat 478.644 kb on - strandat 478.644 kb on - strandat 478.644 kb on - strandat 478.644 kb on - strandat 478.644 kb on - strandat 478.644 kb on - strandat 478.644 kb on - strandat 478.788 kb on + strandat 478.788 kb on + strandat 478.788 kb on + strandat 478.788 kb on + strandat 478.789 kb on - strandat 478.879 kb on + strandat 478.880 kb on - strandat 478.880 kb on - strandat 478.880 kb on - strandat 479.021 kb on + strand, within ABZR87_RS02230at 479.021 kb on + strand, within ABZR87_RS02230at 479.021 kb on + strand, within ABZR87_RS02230at 479.021 kb on + strand, within ABZR87_RS02230at 479.021 kb on + strand, within ABZR87_RS02230at 479.021 kb on + strand, within ABZR87_RS02230at 479.022 kb on - strand, within ABZR87_RS02230at 479.042 kb on + strand, within ABZR87_RS02230at 479.042 kb on + strand, within ABZR87_RS02230at 479.062 kb on + strand, within ABZR87_RS02230at 479.210 kb on + strand, within ABZR87_RS02230at 479.210 kb on + strand, within ABZR87_RS02230at 479.231 kb on + strand, within ABZR87_RS02230at 479.231 kb on + strand, within ABZR87_RS02230at 479.232 kb on - strand, within ABZR87_RS02230at 479.232 kb on - strand, within ABZR87_RS02230at 479.232 kb on - strand, within ABZR87_RS02230at 479.232 kb on - strand, within ABZR87_RS02230at 479.232 kb on - strand, within ABZR87_RS02230at 479.289 kb on + strand, within ABZR87_RS02230at 479.289 kb on + strand, within ABZR87_RS02230at 479.289 kb on + strand, within ABZR87_RS02230at 479.289 kb on + strand, within ABZR87_RS02230at 479.290 kb on - strand, within ABZR87_RS02230at 479.360 kb on + strandat 479.360 kb on + strandat 479.360 kb on + strandat 479.361 kb on - strandat 479.361 kb on - strandat 479.556 kb on + strandat 479.556 kb on + strandat 479.556 kb on + strandat 479.556 kb on + strandat 479.556 kb on + strandat 479.556 kb on + strandat 479.556 kb on + strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.694 kb on + strand, within ABZR87_RS02235at 479.694 kb on + strand, within ABZR87_RS02235at 479.695 kb on - strand, within ABZR87_RS02235at 479.917 kb on - strand, within ABZR87_RS02235at 479.958 kb on + strand, within ABZR87_RS02235at 480.073 kb on - strand, within ABZR87_RS02235at 480.073 kb on - strand, within ABZR87_RS02235at 480.321 kb on + strand, within ABZR87_RS02235at 480.321 kb on + strand, within ABZR87_RS02235at 480.321 kb on + strand, within ABZR87_RS02235at 480.322 kb on - strand, within ABZR87_RS02235at 480.322 kb on - strand, within ABZR87_RS02235at 480.322 kb on - strand, within ABZR87_RS02235at 480.322 kb on - strand, within ABZR87_RS02235

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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478,069 - ABZR87_RS02225 0.65 -2.7
478,069 - ABZR87_RS02225 0.65 -3.6
478,165 - ABZR87_RS02225 0.69 -2.5
478,390 + ABZR87_RS02225 0.79 -1.6
478,391 - ABZR87_RS02225 0.79 -0.9
478,530 + ABZR87_RS02225 0.85 +0.1
478,530 + ABZR87_RS02225 0.85 +0.1
478,563 - ABZR87_RS02225 0.87 -2.4
478,635 + ABZR87_RS02225 0.90 -0.1
478,636 - ABZR87_RS02225 0.90 -1.2
478,636 - ABZR87_RS02225 0.90 -2.2
478,639 + ABZR87_RS02225 0.90 -2.0
478,639 + ABZR87_RS02225 0.90 +0.1
478,639 + ABZR87_RS02225 0.90 -3.4
478,639 + ABZR87_RS02225 0.90 -1.5
478,639 + ABZR87_RS02225 0.90 -1.9
478,639 + ABZR87_RS02225 0.90 -2.8
478,639 + ABZR87_RS02225 0.90 -3.1
478,640 - -2.3
478,640 - -3.4
478,640 - -2.6
478,640 - -2.1
478,640 - -2.5
478,643 + +0.1
478,643 + -1.5
478,643 + +1.1
478,643 + -2.1
478,643 + -2.3
478,643 + -1.2
478,643 + -3.2
478,643 + -2.4
478,643 + +0.1
478,643 + -0.9
478,644 - -2.8
478,644 - +0.1
478,644 - -2.8
478,644 - -2.5
478,644 - -0.5
478,644 - -2.4
478,644 - -2.8
478,644 - -1.5
478,644 - -4.7
478,644 - -2.0
478,644 - -0.3
478,788 + -2.2
478,788 + -2.8
478,788 + -1.9
478,788 + +0.4
478,789 - -5.4
478,879 + +0.0
478,880 - -1.1
478,880 - -1.7
478,880 - +1.1
479,021 + ABZR87_RS02230 0.27 -0.4
479,021 + ABZR87_RS02230 0.27 -2.9
479,021 + ABZR87_RS02230 0.27 -1.4
479,021 + ABZR87_RS02230 0.27 -2.8
479,021 + ABZR87_RS02230 0.27 -1.6
479,021 + ABZR87_RS02230 0.27 -0.9
479,022 - ABZR87_RS02230 0.27 -2.5
479,042 + ABZR87_RS02230 0.31 -2.8
479,042 + ABZR87_RS02230 0.31 -1.4
479,062 + ABZR87_RS02230 0.36 -2.5
479,210 + ABZR87_RS02230 0.67 -1.0
479,210 + ABZR87_RS02230 0.67 -0.2
479,231 + ABZR87_RS02230 0.72 -1.0
479,231 + ABZR87_RS02230 0.72 -1.3
479,232 - ABZR87_RS02230 0.72 -2.7
479,232 - ABZR87_RS02230 0.72 -2.6
479,232 - ABZR87_RS02230 0.72 +1.1
479,232 - ABZR87_RS02230 0.72 -2.1
479,232 - ABZR87_RS02230 0.72 -0.5
479,289 + ABZR87_RS02230 0.84 +0.0
479,289 + ABZR87_RS02230 0.84 -0.9
479,289 + ABZR87_RS02230 0.84 +0.7
479,289 + ABZR87_RS02230 0.84 -0.1
479,290 - ABZR87_RS02230 0.84 -4.3
479,360 + +0.1
479,360 + -0.5
479,360 + +1.0
479,361 - -1.9
479,361 - -1.2
479,556 + -2.9
479,556 + -1.2
479,556 + -0.9
479,556 + -1.7
479,556 + -2.1
479,556 + -1.6
479,556 + -2.2
479,557 - -2.6
479,557 - +1.1
479,557 - -2.4
479,557 - -2.9
479,557 - -2.7
479,694 + ABZR87_RS02235 0.16 -1.9
479,694 + ABZR87_RS02235 0.16 -2.7
479,695 - ABZR87_RS02235 0.16 -2.2
479,917 - ABZR87_RS02235 0.27 -1.7
479,958 + ABZR87_RS02235 0.29 +0.3
480,073 - ABZR87_RS02235 0.35 -2.1
480,073 - ABZR87_RS02235 0.35 -2.1
480,321 + ABZR87_RS02235 0.48 -2.3
480,321 + ABZR87_RS02235 0.48 -3.7
480,321 + ABZR87_RS02235 0.48 -1.9
480,322 - ABZR87_RS02235 0.48 -2.5
480,322 - ABZR87_RS02235 0.48 -1.9
480,322 - ABZR87_RS02235 0.48 -1.5
480,322 - ABZR87_RS02235 0.48 +1.1

Or see this region's nucleotide sequence