Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00560 and ABZR87_RS00565 are separated by 13 nucleotides ABZR87_RS00565 and ABZR87_RS00570 are separated by 58 nucleotides ABZR87_RS00570 and ABZR87_RS00575 are separated by 497 nucleotides
ABZR87_RS00560: ABZR87_RS00560 - DNA-3-methyladenine glycosylase 2, at 114,923 to 116,398
_RS00560
ABZR87_RS00565: ABZR87_RS00565 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 116,412 to 116,960
_RS00565
ABZR87_RS00570: ABZR87_RS00570 - DMT family transporter, at 117,019 to 117,951
_RS00570
ABZR87_RS00575: ABZR87_RS00575 - HipA N-terminal domain-containing protein, at 118,449 to 119,759
_RS00575
Position (kb) 117
118 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 116.192 kb on + strand, within ABZR87_RS00560 at 116.192 kb on + strand, within ABZR87_RS00560 at 116.192 kb on + strand, within ABZR87_RS00560 at 116.192 kb on + strand, within ABZR87_RS00560 at 116.192 kb on + strand, within ABZR87_RS00560 at 116.192 kb on + strand, within ABZR87_RS00560 at 116.193 kb on - strand, within ABZR87_RS00560 at 116.193 kb on - strand, within ABZR87_RS00560 at 116.193 kb on - strand, within ABZR87_RS00560 at 116.193 kb on - strand, within ABZR87_RS00560 at 116.193 kb on - strand, within ABZR87_RS00560 at 116.243 kb on + strand, within ABZR87_RS00560 at 116.243 kb on + strand, within ABZR87_RS00560 at 116.243 kb on + strand, within ABZR87_RS00560 at 116.244 kb on - strand, within ABZR87_RS00560 at 116.340 kb on - strand at 116.340 kb on - strand at 116.415 kb on + strand at 116.416 kb on - strand at 116.416 kb on - strand at 116.586 kb on + strand, within ABZR87_RS00565 at 116.587 kb on - strand, within ABZR87_RS00565 at 116.587 kb on - strand, within ABZR87_RS00565 at 116.587 kb on - strand, within ABZR87_RS00565 at 116.700 kb on + strand, within ABZR87_RS00565 at 116.700 kb on + strand, within ABZR87_RS00565 at 116.700 kb on + strand, within ABZR87_RS00565 at 116.700 kb on + strand, within ABZR87_RS00565 at 116.700 kb on + strand, within ABZR87_RS00565 at 116.700 kb on + strand, within ABZR87_RS00565 at 116.701 kb on - strand, within ABZR87_RS00565 at 116.701 kb on - strand, within ABZR87_RS00565 at 116.701 kb on - strand, within ABZR87_RS00565 at 116.701 kb on - strand, within ABZR87_RS00565 at 116.701 kb on - strand, within ABZR87_RS00565 at 116.958 kb on + strand at 116.958 kb on + strand at 117.116 kb on + strand, within ABZR87_RS00570 at 117.116 kb on + strand, within ABZR87_RS00570 at 117.279 kb on + strand, within ABZR87_RS00570 at 117.279 kb on + strand, within ABZR87_RS00570 at 117.280 kb on - strand, within ABZR87_RS00570 at 117.297 kb on + strand, within ABZR87_RS00570 at 117.298 kb on - strand, within ABZR87_RS00570 at 117.298 kb on - strand, within ABZR87_RS00570 at 117.298 kb on - strand, within ABZR87_RS00570 at 117.298 kb on - strand, within ABZR87_RS00570 at 117.298 kb on - strand, within ABZR87_RS00570 at 117.348 kb on + strand, within ABZR87_RS00570 at 117.348 kb on + strand, within ABZR87_RS00570 at 117.348 kb on + strand, within ABZR87_RS00570 at 117.348 kb on + strand, within ABZR87_RS00570 at 117.348 kb on + strand, within ABZR87_RS00570 at 117.349 kb on - strand, within ABZR87_RS00570 at 117.349 kb on - strand, within ABZR87_RS00570 at 117.349 kb on - strand, within ABZR87_RS00570 at 117.349 kb on - strand, within ABZR87_RS00570 at 117.349 kb on - strand, within ABZR87_RS00570 at 117.349 kb on - strand, within ABZR87_RS00570 at 117.500 kb on - strand, within ABZR87_RS00570 at 117.517 kb on + strand, within ABZR87_RS00570 at 117.517 kb on + strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.607 kb on + strand, within ABZR87_RS00570 at 117.607 kb on + strand, within ABZR87_RS00570 at 117.691 kb on + strand, within ABZR87_RS00570 at 117.691 kb on + strand, within ABZR87_RS00570 at 117.691 kb on + strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 118.020 kb on + strand at 118.021 kb on - strand at 118.021 kb on - strand at 118.086 kb on + strand at 118.086 kb on + strand at 118.087 kb on - strand at 118.137 kb on + strand at 118.197 kb on - strand at 118.281 kb on + strand at 118.281 kb on + strand at 118.282 kb on - strand at 118.312 kb on + strand at 118.312 kb on + strand at 118.312 kb on + strand at 118.313 kb on - strand at 118.313 kb on - strand at 118.313 kb on - strand at 118.355 kb on + strand at 118.355 kb on + strand at 118.355 kb on + strand at 118.355 kb on + strand at 118.356 kb on - strand at 118.433 kb on + strand at 118.433 kb on + strand at 118.434 kb on - strand at 118.434 kb on - strand at 118.434 kb on - strand at 118.442 kb on + strand at 118.461 kb on + strand at 118.461 kb on + strand at 118.461 kb on + strand at 118.461 kb on + strand at 118.462 kb on - strand at 118.469 kb on + strand at 118.469 kb on + strand at 118.470 kb on - strand at 118.470 kb on - strand at 118.470 kb on - strand at 118.489 kb on + strand at 118.489 kb on + strand at 118.489 kb on + strand at 118.490 kb on - strand at 118.490 kb on - strand at 118.490 kb on - strand at 118.521 kb on + strand at 118.522 kb on - strand at 118.561 kb on + strand at 118.561 kb on + strand at 118.562 kb on - strand at 118.580 kb on + strand, within ABZR87_RS00575 at 118.580 kb on + strand, within ABZR87_RS00575 at 118.581 kb on - strand, within ABZR87_RS00575 at 118.581 kb on - strand, within ABZR87_RS00575 at 118.581 kb on - strand, within ABZR87_RS00575 at 118.592 kb on + strand, within ABZR87_RS00575 at 118.593 kb on - strand, within ABZR87_RS00575 at 118.638 kb on + strand, within ABZR87_RS00575 at 118.638 kb on + strand, within ABZR87_RS00575 at 118.638 kb on + strand, within ABZR87_RS00575 at 118.638 kb on + strand, within ABZR87_RS00575 at 118.638 kb on + strand, within ABZR87_RS00575 at 118.639 kb on - strand, within ABZR87_RS00575 at 118.639 kb on - strand, within ABZR87_RS00575 at 118.639 kb on - strand, within ABZR87_RS00575 at 118.915 kb on + strand, within ABZR87_RS00575 at 118.916 kb on - strand, within ABZR87_RS00575 at 118.945 kb on + strand, within ABZR87_RS00575 at 118.946 kb on - strand, within ABZR87_RS00575 at 118.946 kb on - strand, within ABZR87_RS00575
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 116,192 + ABZR87_RS00560 0.86 -0.2 116,192 + ABZR87_RS00560 0.86 +0.3 116,192 + ABZR87_RS00560 0.86 +0.3 116,192 + ABZR87_RS00560 0.86 -0.2 116,192 + ABZR87_RS00560 0.86 -0.3 116,192 + ABZR87_RS00560 0.86 +0.9 116,193 - ABZR87_RS00560 0.86 +0.4 116,193 - ABZR87_RS00560 0.86 +1.6 116,193 - ABZR87_RS00560 0.86 +0.9 116,193 - ABZR87_RS00560 0.86 -0.1 116,193 - ABZR87_RS00560 0.86 +1.8 116,243 + ABZR87_RS00560 0.89 -0.2 116,243 + ABZR87_RS00560 0.89 -0.4 116,243 + ABZR87_RS00560 0.89 +0.4 116,244 - ABZR87_RS00560 0.89 +1.3 116,340 - +0.8 116,340 - +0.6 116,415 + +0.4 116,416 - -0.2 116,416 - +0.5 116,586 + ABZR87_RS00565 0.32 -0.1 116,587 - ABZR87_RS00565 0.32 -1.4 116,587 - ABZR87_RS00565 0.32 +0.2 116,587 - ABZR87_RS00565 0.32 -0.3 116,700 + ABZR87_RS00565 0.52 -0.5 116,700 + ABZR87_RS00565 0.52 +0.7 116,700 + ABZR87_RS00565 0.52 +0.4 116,700 + ABZR87_RS00565 0.52 -0.4 116,700 + ABZR87_RS00565 0.52 +0.2 116,700 + ABZR87_RS00565 0.52 +0.3 116,701 - ABZR87_RS00565 0.53 -1.2 116,701 - ABZR87_RS00565 0.53 +0.2 116,701 - ABZR87_RS00565 0.53 +0.5 116,701 - ABZR87_RS00565 0.53 -0.6 116,701 - ABZR87_RS00565 0.53 +1.6 116,958 + -0.2 116,958 + +0.2 117,116 + ABZR87_RS00570 0.10 +0.1 117,116 + ABZR87_RS00570 0.10 -0.8 117,279 + ABZR87_RS00570 0.28 +0.4 117,279 + ABZR87_RS00570 0.28 +0.1 117,280 - ABZR87_RS00570 0.28 +0.8 117,297 + ABZR87_RS00570 0.30 +0.6 117,298 - ABZR87_RS00570 0.30 -0.1 117,298 - ABZR87_RS00570 0.30 +0.6 117,298 - ABZR87_RS00570 0.30 -0.2 117,298 - ABZR87_RS00570 0.30 +0.6 117,298 - ABZR87_RS00570 0.30 +0.7 117,348 + ABZR87_RS00570 0.35 +1.4 117,348 + ABZR87_RS00570 0.35 +0.2 117,348 + ABZR87_RS00570 0.35 +1.0 117,348 + ABZR87_RS00570 0.35 +0.3 117,348 + ABZR87_RS00570 0.35 -0.6 117,349 - ABZR87_RS00570 0.35 -0.2 117,349 - ABZR87_RS00570 0.35 +0.3 117,349 - ABZR87_RS00570 0.35 +1.0 117,349 - ABZR87_RS00570 0.35 -0.4 117,349 - ABZR87_RS00570 0.35 -0.2 117,349 - ABZR87_RS00570 0.35 +1.0 117,500 - ABZR87_RS00570 0.52 -0.1 117,517 + ABZR87_RS00570 0.53 -0.4 117,517 + ABZR87_RS00570 0.53 +0.1 117,518 - ABZR87_RS00570 0.53 -0.4 117,518 - ABZR87_RS00570 0.53 +0.9 117,518 - ABZR87_RS00570 0.53 -2.1 117,518 - ABZR87_RS00570 0.53 +0.3 117,518 - ABZR87_RS00570 0.53 +0.2 117,518 - ABZR87_RS00570 0.53 +0.8 117,607 + ABZR87_RS00570 0.63 -0.5 117,607 + ABZR87_RS00570 0.63 -0.7 117,691 + ABZR87_RS00570 0.72 -0.6 117,691 + ABZR87_RS00570 0.72 +0.0 117,691 + ABZR87_RS00570 0.72 +1.6 117,692 - ABZR87_RS00570 0.72 +0.4 117,692 - ABZR87_RS00570 0.72 -1.0 117,692 - ABZR87_RS00570 0.72 +3.1 117,692 - ABZR87_RS00570 0.72 +0.5 117,692 - ABZR87_RS00570 0.72 +0.8 117,692 - ABZR87_RS00570 0.72 +0.6 118,020 + +0.6 118,021 - +0.6 118,021 - +1.3 118,086 + +0.4 118,086 + +0.3 118,087 - +1.3 118,137 + +0.7 118,197 - +2.1 118,281 + +0.4 118,281 + +0.0 118,282 - +1.1 118,312 + +1.2 118,312 + -0.2 118,312 + +1.3 118,313 - +1.0 118,313 - +1.0 118,313 - +2.5 118,355 + +0.8 118,355 + +0.9 118,355 + +1.0 118,355 + +0.6 118,356 - +0.9 118,433 + +0.7 118,433 + +0.8 118,434 - +1.2 118,434 - +0.2 118,434 - +1.7 118,442 + +1.5 118,461 + +1.8 118,461 + +0.6 118,461 + +0.7 118,461 + +1.6 118,462 - +0.6 118,469 + +0.4 118,469 + +1.0 118,470 - +2.0 118,470 - +0.8 118,470 - +0.1 118,489 + +0.9 118,489 + +1.6 118,489 + +0.7 118,490 - +1.2 118,490 - +0.6 118,490 - +1.0 118,521 + +0.8 118,522 - +1.4 118,561 + +0.4 118,561 + +1.0 118,562 - +1.2 118,580 + ABZR87_RS00575 0.10 +0.1 118,580 + ABZR87_RS00575 0.10 +1.8 118,581 - ABZR87_RS00575 0.10 +4.0 118,581 - ABZR87_RS00575 0.10 +0.7 118,581 - ABZR87_RS00575 0.10 +1.4 118,592 + ABZR87_RS00575 0.11 +0.9 118,593 - ABZR87_RS00575 0.11 +0.1 118,638 + ABZR87_RS00575 0.14 +0.8 118,638 + ABZR87_RS00575 0.14 +2.1 118,638 + ABZR87_RS00575 0.14 +1.4 118,638 + ABZR87_RS00575 0.14 +2.4 118,638 + ABZR87_RS00575 0.14 +0.5 118,639 - ABZR87_RS00575 0.14 +0.8 118,639 - ABZR87_RS00575 0.14 +1.8 118,639 - ABZR87_RS00575 0.14 +1.3 118,915 + ABZR87_RS00575 0.36 +1.0 118,916 - ABZR87_RS00575 0.36 +1.4 118,945 + ABZR87_RS00575 0.38 +1.1 118,946 - ABZR87_RS00575 0.38 +1.2 118,946 - ABZR87_RS00575 0.38 +2.0
Or see this region's nucleotide sequence