Experiment: BG11 with perchlorate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt serS and nifU are separated by 43 nucleotides nifU and Synpcc7942_0451 are separated by 374 nucleotides Synpcc7942_0451 and Synpcc7942_0452 are separated by 57 nucleotides Synpcc7942_0452 and Synpcc7942_0453 are separated by 185 nucleotides
Synpcc7942_0449: serS - seryl-tRNA synthetase, at 438,675 to 440,006
serS
Synpcc7942_0450: nifU - putative NifU-like protein, at 440,050 to 440,295
nifU
Synpcc7942_0451: Synpcc7942_0451 - esterase, at 440,670 to 441,299
_0451
Synpcc7942_0452: Synpcc7942_0452 - hypothetical protein, at 441,357 to 441,836
_0452
Synpcc7942_0453: Synpcc7942_0453 - GAF sensor signal transduction histidine kinase, at 442,022 to 443,236
_0453
Position (kb) 440
441
442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 440.033 kb on + strand at 440.036 kb on - strand at 440.354 kb on + strand at 440.362 kb on - strand at 440.368 kb on - strand at 440.382 kb on + strand at 440.390 kb on + strand at 440.390 kb on - strand at 440.462 kb on + strand at 440.489 kb on - strand at 440.491 kb on + strand at 440.501 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.528 kb on + strand at 440.529 kb on - strand at 440.529 kb on - strand at 440.645 kb on + strand at 440.653 kb on + strand at 440.661 kb on - strand at 440.661 kb on - strand at 440.665 kb on + strand at 440.665 kb on + strand at 440.742 kb on - strand, within Synpcc7942_0451 at 440.742 kb on - strand, within Synpcc7942_0451 at 440.753 kb on + strand, within Synpcc7942_0451 at 440.759 kb on + strand, within Synpcc7942_0451 at 440.790 kb on + strand, within Synpcc7942_0451 at 440.798 kb on + strand, within Synpcc7942_0451 at 440.798 kb on - strand, within Synpcc7942_0451 at 440.798 kb on - strand, within Synpcc7942_0451 at 440.849 kb on + strand, within Synpcc7942_0451 at 440.860 kb on + strand at 440.860 kb on + strand, within Synpcc7942_0451 at 440.860 kb on + strand, within Synpcc7942_0451 at 440.864 kb on + strand, within Synpcc7942_0451 at 440.868 kb on - strand, within Synpcc7942_0451 at 440.868 kb on - strand, within Synpcc7942_0451 at 440.868 kb on - strand, within Synpcc7942_0451 at 440.878 kb on + strand, within Synpcc7942_0451 at 440.883 kb on + strand, within Synpcc7942_0451 at 440.886 kb on - strand, within Synpcc7942_0451 at 440.914 kb on - strand, within Synpcc7942_0451 at 440.964 kb on + strand, within Synpcc7942_0451 at 440.975 kb on - strand, within Synpcc7942_0451 at 441.020 kb on - strand, within Synpcc7942_0451 at 441.039 kb on - strand, within Synpcc7942_0451 at 441.049 kb on - strand, within Synpcc7942_0451 at 441.068 kb on + strand, within Synpcc7942_0451 at 441.074 kb on + strand, within Synpcc7942_0451 at 441.074 kb on + strand, within Synpcc7942_0451 at 441.082 kb on - strand, within Synpcc7942_0451 at 441.082 kb on - strand, within Synpcc7942_0451 at 441.106 kb on + strand, within Synpcc7942_0451 at 441.144 kb on + strand, within Synpcc7942_0451 at 441.194 kb on + strand, within Synpcc7942_0451 at 441.196 kb on + strand, within Synpcc7942_0451 at 441.202 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.209 kb on - strand, within Synpcc7942_0451 at 441.235 kb on + strand, within Synpcc7942_0451 at 441.272 kb on + strand at 441.280 kb on - strand at 441.440 kb on + strand, within Synpcc7942_0452 at 441.505 kb on + strand, within Synpcc7942_0452 at 441.573 kb on - strand, within Synpcc7942_0452 at 441.765 kb on + strand, within Synpcc7942_0452 at 441.860 kb on + strand at 441.915 kb on + strand at 441.924 kb on + strand at 441.924 kb on + strand at 441.936 kb on + strand at 441.937 kb on + strand at 441.967 kb on - strand at 441.991 kb on - strand at 441.992 kb on + strand at 442.004 kb on + strand at 442.012 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with perchlorate 25 mM remove 440,033 + -0.8 440,036 - -1.5 440,354 + -0.3 440,362 - +0.2 440,368 - -1.3 440,382 + +0.3 440,390 + +0.8 440,390 - -1.4 440,462 + -1.1 440,489 - -1.7 440,491 + -0.3 440,501 + +0.4 440,521 + -1.3 440,521 + -1.3 440,521 + +0.3 440,528 + -0.2 440,529 - -0.1 440,529 - +0.1 440,645 + -0.3 440,653 + -1.9 440,661 - -1.7 440,661 - +0.8 440,665 + -0.6 440,665 + +0.0 440,742 - Synpcc7942_0451 0.11 -0.6 440,742 - Synpcc7942_0451 0.11 -1.0 440,753 + Synpcc7942_0451 0.13 +0.8 440,759 + Synpcc7942_0451 0.14 -0.2 440,790 + Synpcc7942_0451 0.19 +1.1 440,798 + Synpcc7942_0451 0.20 +1.2 440,798 - Synpcc7942_0451 0.20 -0.4 440,798 - Synpcc7942_0451 0.20 +0.6 440,849 + Synpcc7942_0451 0.28 -1.4 440,860 + +1.9 440,860 + Synpcc7942_0451 0.30 -0.0 440,860 + Synpcc7942_0451 0.30 +0.5 440,864 + Synpcc7942_0451 0.31 -2.5 440,868 - Synpcc7942_0451 0.31 +1.9 440,868 - Synpcc7942_0451 0.31 -1.8 440,868 - Synpcc7942_0451 0.31 +1.1 440,878 + Synpcc7942_0451 0.33 +0.6 440,883 + Synpcc7942_0451 0.34 -1.1 440,886 - Synpcc7942_0451 0.34 -0.9 440,914 - Synpcc7942_0451 0.39 -0.0 440,964 + Synpcc7942_0451 0.47 -0.7 440,975 - Synpcc7942_0451 0.48 -1.1 441,020 - Synpcc7942_0451 0.56 -1.9 441,039 - Synpcc7942_0451 0.59 -0.9 441,049 - Synpcc7942_0451 0.60 -3.1 441,068 + Synpcc7942_0451 0.63 -2.7 441,074 + Synpcc7942_0451 0.64 -0.5 441,074 + Synpcc7942_0451 0.64 -1.1 441,082 - Synpcc7942_0451 0.65 -0.3 441,082 - Synpcc7942_0451 0.65 +0.0 441,106 + Synpcc7942_0451 0.69 -1.3 441,144 + Synpcc7942_0451 0.75 +0.2 441,194 + Synpcc7942_0451 0.83 -0.6 441,196 + Synpcc7942_0451 0.83 -1.1 441,202 - Synpcc7942_0451 0.84 +0.3 441,204 - Synpcc7942_0451 0.85 +0.3 441,204 - Synpcc7942_0451 0.85 -1.4 441,204 - Synpcc7942_0451 0.85 -1.6 441,209 - Synpcc7942_0451 0.86 -0.6 441,235 + Synpcc7942_0451 0.90 +1.1 441,272 + -0.2 441,280 - +0.2 441,440 + Synpcc7942_0452 0.17 -2.6 441,505 + Synpcc7942_0452 0.31 -3.1 441,573 - Synpcc7942_0452 0.45 -3.1 441,765 + Synpcc7942_0452 0.85 -0.1 441,860 + -1.5 441,915 + -0.3 441,924 + +1.0 441,924 + +0.5 441,936 + -0.2 441,937 + -0.6 441,967 - -1.0 441,991 - -0.1 441,992 + -0.1 442,004 + +0.5 442,012 - +0.2
Or see this region's nucleotide sequence