Experiment: BG11 with perchlorate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hoxF and cinA are separated by 9 nucleotides cinA and Synpcc7942_0281 are separated by 9 nucleotides
Synpcc7942_0279: hoxF - NADH dehydrogenase (quinone), at 274,154 to 275,758
hoxF
Synpcc7942_0280: cinA - competence damage-inducible protein A, at 275,768 to 277,033
cinA
Synpcc7942_0281: Synpcc7942_0281 - probable glycosyltransferase, at 277,043 to 278,116
_0281
Position (kb) 275
276
277
278 Strain fitness (log2 ratio) -2
-1
0
1
2 at 274.769 kb on - strand, within hoxF at 274.769 kb on - strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.791 kb on + strand, within hoxF at 274.794 kb on + strand, within hoxF at 274.799 kb on - strand, within hoxF at 274.802 kb on + strand, within hoxF at 274.839 kb on + strand, within hoxF at 274.898 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.954 kb on - strand, within hoxF at 274.987 kb on - strand, within hoxF at 275.065 kb on - strand, within hoxF at 275.065 kb on - strand, within hoxF at 275.078 kb on - strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.113 kb on + strand, within hoxF at 275.139 kb on + strand, within hoxF at 275.150 kb on + strand, within hoxF at 275.226 kb on + strand, within hoxF at 275.314 kb on - strand, within hoxF at 275.350 kb on - strand, within hoxF at 275.356 kb on + strand, within hoxF at 275.381 kb on - strand, within hoxF at 275.382 kb on - strand, within hoxF at 275.405 kb on - strand, within hoxF at 275.407 kb on + strand, within hoxF at 275.441 kb on - strand, within hoxF at 275.455 kb on - strand, within hoxF at 275.457 kb on + strand, within hoxF at 275.457 kb on + strand, within hoxF at 275.501 kb on + strand, within hoxF at 275.543 kb on + strand, within hoxF at 275.550 kb on + strand, within hoxF at 275.551 kb on - strand, within hoxF at 275.569 kb on + strand, within hoxF at 275.569 kb on - strand, within hoxF at 275.579 kb on + strand, within hoxF at 275.579 kb on + strand, within hoxF at 275.587 kb on - strand, within hoxF at 275.598 kb on + strand at 275.598 kb on + strand at 275.606 kb on - strand at 275.606 kb on - strand at 275.609 kb on + strand at 275.616 kb on - strand at 275.660 kb on - strand at 275.661 kb on + strand at 275.680 kb on + strand at 275.682 kb on + strand at 275.692 kb on + strand at 275.710 kb on - strand at 275.715 kb on + strand at 275.735 kb on - strand at 275.751 kb on + strand at 275.759 kb on - strand at 275.789 kb on + strand at 275.856 kb on + strand at 275.864 kb on - strand at 275.864 kb on - strand at 275.864 kb on - strand at 275.866 kb on + strand at 275.871 kb on + strand at 275.893 kb on - strand at 275.912 kb on - strand, within cinA at 275.912 kb on - strand, within cinA at 275.973 kb on + strand, within cinA at 275.993 kb on + strand, within cinA at 276.003 kb on - strand, within cinA at 276.016 kb on + strand, within cinA at 276.016 kb on + strand, within cinA at 276.020 kb on + strand, within cinA at 276.024 kb on - strand, within cinA at 276.025 kb on + strand, within cinA at 276.069 kb on + strand, within cinA at 276.095 kb on + strand, within cinA at 276.103 kb on - strand, within cinA at 276.116 kb on + strand, within cinA at 276.145 kb on - strand, within cinA at 276.182 kb on + strand, within cinA at 276.220 kb on + strand, within cinA at 276.228 kb on - strand, within cinA at 276.251 kb on + strand, within cinA at 276.271 kb on - strand, within cinA at 276.292 kb on + strand, within cinA at 276.292 kb on + strand, within cinA at 276.300 kb on - strand, within cinA at 276.300 kb on - strand, within cinA at 276.316 kb on + strand, within cinA at 276.319 kb on - strand, within cinA at 276.338 kb on - strand, within cinA at 276.348 kb on + strand, within cinA at 276.376 kb on + strand, within cinA at 276.386 kb on + strand, within cinA at 276.409 kb on + strand, within cinA at 276.417 kb on - strand, within cinA at 276.514 kb on + strand, within cinA at 276.521 kb on - strand, within cinA at 276.521 kb on - strand, within cinA at 276.531 kb on - strand, within cinA at 276.572 kb on + strand, within cinA at 276.589 kb on - strand, within cinA at 276.638 kb on - strand, within cinA at 276.695 kb on - strand, within cinA at 276.695 kb on - strand, within cinA at 276.750 kb on + strand, within cinA at 276.751 kb on - strand, within cinA at 276.772 kb on + strand, within cinA at 276.808 kb on + strand, within cinA at 276.817 kb on + strand, within cinA at 276.822 kb on + strand, within cinA at 276.835 kb on + strand, within cinA at 276.843 kb on - strand, within cinA at 276.867 kb on + strand, within cinA at 276.875 kb on - strand, within cinA at 276.875 kb on - strand, within cinA at 276.909 kb on - strand at 276.929 kb on + strand at 276.942 kb on + strand at 276.947 kb on + strand at 276.962 kb on + strand at 276.972 kb on + strand at 276.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with perchlorate 25 mM remove 274,769 - hoxF Synpcc7942_0279 0.38 +0.3 274,769 - hoxF Synpcc7942_0279 0.38 +1.0 274,778 + hoxF Synpcc7942_0279 0.39 +1.5 274,778 + hoxF Synpcc7942_0279 0.39 -1.2 274,778 + hoxF Synpcc7942_0279 0.39 +1.5 274,778 + hoxF Synpcc7942_0279 0.39 +0.7 274,778 + hoxF Synpcc7942_0279 0.39 -0.5 274,786 - hoxF Synpcc7942_0279 0.39 +0.9 274,786 - hoxF Synpcc7942_0279 0.39 -1.1 274,786 - hoxF Synpcc7942_0279 0.39 +1.0 274,786 - hoxF Synpcc7942_0279 0.39 -1.1 274,791 + hoxF Synpcc7942_0279 0.40 +0.2 274,794 + hoxF Synpcc7942_0279 0.40 -0.0 274,799 - hoxF Synpcc7942_0279 0.40 +0.4 274,802 + hoxF Synpcc7942_0279 0.40 +0.1 274,839 + hoxF Synpcc7942_0279 0.43 -2.4 274,898 + hoxF Synpcc7942_0279 0.46 -0.4 274,946 + hoxF Synpcc7942_0279 0.49 +0.7 274,946 + hoxF Synpcc7942_0279 0.49 -1.6 274,946 + hoxF Synpcc7942_0279 0.49 -1.9 274,946 + hoxF Synpcc7942_0279 0.49 +1.5 274,954 - hoxF Synpcc7942_0279 0.50 +1.6 274,987 - hoxF Synpcc7942_0279 0.52 -0.6 275,065 - hoxF Synpcc7942_0279 0.57 -2.1 275,065 - hoxF Synpcc7942_0279 0.57 -1.3 275,078 - hoxF Synpcc7942_0279 0.58 -2.3 275,103 + hoxF Synpcc7942_0279 0.59 -1.4 275,103 + hoxF Synpcc7942_0279 0.59 -0.5 275,103 + hoxF Synpcc7942_0279 0.59 -0.0 275,111 - hoxF Synpcc7942_0279 0.60 -0.6 275,111 - hoxF Synpcc7942_0279 0.60 -0.2 275,111 - hoxF Synpcc7942_0279 0.60 -1.0 275,113 + hoxF Synpcc7942_0279 0.60 -0.2 275,139 + hoxF Synpcc7942_0279 0.61 +0.1 275,150 + hoxF Synpcc7942_0279 0.62 +0.7 275,226 + hoxF Synpcc7942_0279 0.67 -0.2 275,314 - hoxF Synpcc7942_0279 0.72 -0.1 275,350 - hoxF Synpcc7942_0279 0.75 -0.1 275,356 + hoxF Synpcc7942_0279 0.75 -0.3 275,381 - hoxF Synpcc7942_0279 0.76 -0.6 275,382 - hoxF Synpcc7942_0279 0.77 -0.1 275,405 - hoxF Synpcc7942_0279 0.78 -0.4 275,407 + hoxF Synpcc7942_0279 0.78 -0.6 275,441 - hoxF Synpcc7942_0279 0.80 +0.4 275,455 - hoxF Synpcc7942_0279 0.81 -1.2 275,457 + hoxF Synpcc7942_0279 0.81 +1.7 275,457 + hoxF Synpcc7942_0279 0.81 +2.0 275,501 + hoxF Synpcc7942_0279 0.84 +0.0 275,543 + hoxF Synpcc7942_0279 0.87 -0.1 275,550 + hoxF Synpcc7942_0279 0.87 -1.2 275,551 - hoxF Synpcc7942_0279 0.87 +0.1 275,569 + hoxF Synpcc7942_0279 0.88 -0.5 275,569 - hoxF Synpcc7942_0279 0.88 -0.5 275,579 + hoxF Synpcc7942_0279 0.89 -0.1 275,579 + hoxF Synpcc7942_0279 0.89 -1.3 275,587 - hoxF Synpcc7942_0279 0.89 +0.7 275,598 + -0.5 275,598 + +0.1 275,606 - +0.5 275,606 - +0.3 275,609 + -0.1 275,616 - +0.9 275,660 - -1.0 275,661 + +0.6 275,680 + -0.1 275,682 + +0.5 275,692 + -0.9 275,710 - +0.5 275,715 + -0.8 275,735 - -1.6 275,751 + +0.2 275,759 - +1.6 275,789 + -0.3 275,856 + +0.7 275,864 - +0.3 275,864 - +1.3 275,864 - +0.8 275,866 + +0.9 275,871 + +0.1 275,893 - -0.5 275,912 - cinA Synpcc7942_0280 0.11 +0.9 275,912 - cinA Synpcc7942_0280 0.11 -0.3 275,973 + cinA Synpcc7942_0280 0.16 +1.3 275,993 + cinA Synpcc7942_0280 0.18 -2.3 276,003 - cinA Synpcc7942_0280 0.19 +0.4 276,016 + cinA Synpcc7942_0280 0.20 -0.2 276,016 + cinA Synpcc7942_0280 0.20 +0.6 276,020 + cinA Synpcc7942_0280 0.20 +0.4 276,024 - cinA Synpcc7942_0280 0.20 -0.1 276,025 + cinA Synpcc7942_0280 0.20 +1.0 276,069 + cinA Synpcc7942_0280 0.24 +0.8 276,095 + cinA Synpcc7942_0280 0.26 +0.2 276,103 - cinA Synpcc7942_0280 0.26 +0.5 276,116 + cinA Synpcc7942_0280 0.27 +0.1 276,145 - cinA Synpcc7942_0280 0.30 +0.3 276,182 + cinA Synpcc7942_0280 0.33 -0.5 276,220 + cinA Synpcc7942_0280 0.36 +1.4 276,228 - cinA Synpcc7942_0280 0.36 +0.7 276,251 + cinA Synpcc7942_0280 0.38 -0.3 276,271 - cinA Synpcc7942_0280 0.40 +1.0 276,292 + cinA Synpcc7942_0280 0.41 +0.4 276,292 + cinA Synpcc7942_0280 0.41 +0.1 276,300 - cinA Synpcc7942_0280 0.42 +0.9 276,300 - cinA Synpcc7942_0280 0.42 +0.0 276,316 + cinA Synpcc7942_0280 0.43 -0.1 276,319 - cinA Synpcc7942_0280 0.44 +1.0 276,338 - cinA Synpcc7942_0280 0.45 +1.4 276,348 + cinA Synpcc7942_0280 0.46 -0.4 276,376 + cinA Synpcc7942_0280 0.48 +1.5 276,386 + cinA Synpcc7942_0280 0.49 +1.1 276,409 + cinA Synpcc7942_0280 0.51 -0.5 276,417 - cinA Synpcc7942_0280 0.51 -0.3 276,514 + cinA Synpcc7942_0280 0.59 +0.3 276,521 - cinA Synpcc7942_0280 0.59 +0.3 276,521 - cinA Synpcc7942_0280 0.59 -0.2 276,531 - cinA Synpcc7942_0280 0.60 -1.4 276,572 + cinA Synpcc7942_0280 0.64 -0.6 276,589 - cinA Synpcc7942_0280 0.65 +0.7 276,638 - cinA Synpcc7942_0280 0.69 -0.5 276,695 - cinA Synpcc7942_0280 0.73 +1.9 276,695 - cinA Synpcc7942_0280 0.73 +0.3 276,750 + cinA Synpcc7942_0280 0.78 +1.1 276,751 - cinA Synpcc7942_0280 0.78 -0.4 276,772 + cinA Synpcc7942_0280 0.79 -1.4 276,808 + cinA Synpcc7942_0280 0.82 +1.5 276,817 + cinA Synpcc7942_0280 0.83 -0.3 276,822 + cinA Synpcc7942_0280 0.83 -0.6 276,835 + cinA Synpcc7942_0280 0.84 +1.7 276,843 - cinA Synpcc7942_0280 0.85 +0.5 276,867 + cinA Synpcc7942_0280 0.87 +0.1 276,875 - cinA Synpcc7942_0280 0.87 +0.3 276,875 - cinA Synpcc7942_0280 0.87 -0.5 276,909 - +0.5 276,929 + -1.6 276,942 + +1.2 276,947 + -1.3 276,962 + +1.1 276,972 + -0.4 276,988 - +0.4
Or see this region's nucleotide sequence