Experiment: BG11 with perchlorate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfbG and rfbF overlap by 4 nucleotides
Synpcc7942_0061: rfbG - CDP-glucose 4,6-dehydratase, at 61,366 to 62,472
rfbG
Synpcc7942_0062: rfbF - glucose-1-phosphate cytidylyltransferase, at 62,469 to 63,242
rfbF
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 61.492 kb on + strand, within rfbG at 61.492 kb on + strand, within rfbG at 61.498 kb on + strand, within rfbG at 61.541 kb on - strand, within rfbG at 61.543 kb on + strand, within rfbG at 61.548 kb on + strand, within rfbG at 61.578 kb on + strand, within rfbG at 61.578 kb on + strand, within rfbG at 61.586 kb on - strand, within rfbG at 61.599 kb on - strand, within rfbG at 61.601 kb on + strand, within rfbG at 61.609 kb on - strand, within rfbG at 61.634 kb on - strand, within rfbG at 61.635 kb on + strand, within rfbG at 61.658 kb on - strand, within rfbG at 61.667 kb on + strand, within rfbG at 61.693 kb on + strand, within rfbG at 61.703 kb on - strand, within rfbG at 61.723 kb on + strand, within rfbG at 61.733 kb on + strand, within rfbG at 61.733 kb on - strand, within rfbG at 61.764 kb on + strand, within rfbG at 61.764 kb on + strand, within rfbG at 61.812 kb on - strand, within rfbG at 61.812 kb on - strand, within rfbG at 61.814 kb on + strand, within rfbG at 61.845 kb on - strand, within rfbG at 61.847 kb on + strand, within rfbG at 61.850 kb on + strand, within rfbG at 61.855 kb on - strand, within rfbG at 61.855 kb on - strand, within rfbG at 61.954 kb on + strand, within rfbG at 61.960 kb on + strand, within rfbG at 61.960 kb on + strand, within rfbG at 61.970 kb on + strand, within rfbG at 61.970 kb on + strand, within rfbG at 61.978 kb on - strand, within rfbG at 61.982 kb on + strand, within rfbG at 61.984 kb on + strand, within rfbG at 61.984 kb on + strand, within rfbG at 61.990 kb on + strand, within rfbG at 61.990 kb on - strand, within rfbG at 61.990 kb on - strand, within rfbG at 61.992 kb on - strand, within rfbG at 62.025 kb on + strand, within rfbG at 62.031 kb on - strand, within rfbG at 62.031 kb on - strand, within rfbG at 62.031 kb on - strand, within rfbG at 62.060 kb on - strand, within rfbG at 62.060 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.096 kb on + strand, within rfbG at 62.115 kb on + strand, within rfbG at 62.130 kb on + strand, within rfbG at 62.147 kb on + strand, within rfbG at 62.170 kb on - strand, within rfbG at 62.176 kb on + strand, within rfbG at 62.184 kb on - strand, within rfbG at 62.184 kb on - strand, within rfbG at 62.195 kb on + strand, within rfbG at 62.203 kb on - strand, within rfbG at 62.205 kb on - strand, within rfbG at 62.205 kb on - strand, within rfbG at 62.231 kb on - strand, within rfbG at 62.236 kb on + strand, within rfbG at 62.249 kb on + strand, within rfbG at 62.284 kb on + strand, within rfbG at 62.314 kb on + strand, within rfbG at 62.314 kb on + strand, within rfbG at 62.314 kb on + strand, within rfbG at 62.314 kb on + strand at 62.314 kb on + strand, within rfbG at 62.314 kb on + strand, within rfbG at 62.322 kb on - strand, within rfbG at 62.329 kb on - strand, within rfbG at 62.338 kb on + strand, within rfbG at 62.355 kb on + strand, within rfbG at 62.378 kb on - strand at 62.378 kb on - strand at 62.434 kb on + strand at 62.434 kb on + strand at 62.434 kb on + strand at 62.440 kb on - strand at 62.440 kb on - strand at 62.440 kb on - strand at 62.442 kb on - strand at 62.442 kb on - strand at 62.442 kb on - strand at 62.450 kb on - strand at 62.459 kb on + strand at 62.480 kb on + strand at 62.488 kb on - strand at 62.488 kb on - strand at 62.503 kb on + strand at 62.511 kb on - strand at 62.513 kb on + strand at 62.513 kb on + strand at 62.513 kb on + strand at 62.513 kb on + strand at 62.513 kb on + strand at 62.522 kb on - strand at 62.531 kb on + strand at 62.547 kb on - strand, within rfbF at 62.578 kb on - strand, within rfbF at 62.588 kb on - strand, within rfbF at 62.740 kb on - strand, within rfbF at 62.741 kb on + strand, within rfbF at 62.753 kb on + strand, within rfbF at 62.755 kb on - strand, within rfbF at 62.756 kb on - strand, within rfbF at 62.939 kb on - strand, within rfbF at 62.964 kb on - strand, within rfbF at 63.181 kb on - strand at 63.286 kb on + strand at 63.563 kb on + strand at 63.563 kb on + strand at 63.571 kb on - strand at 63.600 kb on - strand at 63.623 kb on + strand at 63.626 kb on - strand at 63.626 kb on - strand at 63.631 kb on - strand at 63.631 kb on - strand at 63.667 kb on - strand at 63.748 kb on + strand at 63.748 kb on + strand at 63.750 kb on - strand at 63.756 kb on - strand at 63.774 kb on + strand at 63.782 kb on - strand at 63.814 kb on + strand at 63.819 kb on - strand at 63.821 kb on - strand at 63.842 kb on + strand at 63.873 kb on - strand at 63.892 kb on + strand at 63.908 kb on + strand at 63.916 kb on - strand at 63.922 kb on - strand at 63.969 kb on - strand at 63.969 kb on - strand at 63.971 kb on + strand at 63.976 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.979 kb on - strand at 63.981 kb on + strand at 63.986 kb on + strand at 63.989 kb on - strand at 63.991 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.996 kb on + strand at 63.996 kb on + strand at 64.004 kb on - strand at 64.004 kb on - strand at 64.010 kb on + strand at 64.018 kb on - strand at 64.025 kb on + strand at 64.038 kb on - strand at 64.079 kb on + strand at 64.085 kb on - strand at 64.087 kb on - strand at 64.106 kb on + strand at 64.160 kb on + strand at 64.168 kb on - strand at 64.168 kb on - strand at 64.171 kb on + strand at 64.179 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.196 kb on + strand at 64.196 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with perchlorate 25 mM remove 61,492 + rfbG Synpcc7942_0061 0.11 -1.2 61,492 + rfbG Synpcc7942_0061 0.11 -0.2 61,498 + rfbG Synpcc7942_0061 0.12 +0.6 61,541 - rfbG Synpcc7942_0061 0.16 -0.4 61,543 + rfbG Synpcc7942_0061 0.16 +1.3 61,548 + rfbG Synpcc7942_0061 0.16 +1.5 61,578 + rfbG Synpcc7942_0061 0.19 +0.6 61,578 + rfbG Synpcc7942_0061 0.19 +1.3 61,586 - rfbG Synpcc7942_0061 0.20 -0.6 61,599 - rfbG Synpcc7942_0061 0.21 -1.5 61,601 + rfbG Synpcc7942_0061 0.21 +1.1 61,609 - rfbG Synpcc7942_0061 0.22 -0.7 61,634 - rfbG Synpcc7942_0061 0.24 +0.1 61,635 + rfbG Synpcc7942_0061 0.24 +0.0 61,658 - rfbG Synpcc7942_0061 0.26 -1.2 61,667 + rfbG Synpcc7942_0061 0.27 +0.2 61,693 + rfbG Synpcc7942_0061 0.30 -1.0 61,703 - rfbG Synpcc7942_0061 0.30 +1.3 61,723 + rfbG Synpcc7942_0061 0.32 -0.2 61,733 + rfbG Synpcc7942_0061 0.33 -1.0 61,733 - rfbG Synpcc7942_0061 0.33 +0.8 61,764 + rfbG Synpcc7942_0061 0.36 -0.3 61,764 + rfbG Synpcc7942_0061 0.36 +0.8 61,812 - rfbG Synpcc7942_0061 0.40 -0.3 61,812 - rfbG Synpcc7942_0061 0.40 -1.7 61,814 + rfbG Synpcc7942_0061 0.40 -1.2 61,845 - rfbG Synpcc7942_0061 0.43 +0.3 61,847 + rfbG Synpcc7942_0061 0.43 -2.4 61,850 + rfbG Synpcc7942_0061 0.44 -0.5 61,855 - rfbG Synpcc7942_0061 0.44 -0.5 61,855 - rfbG Synpcc7942_0061 0.44 +0.8 61,954 + rfbG Synpcc7942_0061 0.53 -1.3 61,960 + rfbG Synpcc7942_0061 0.54 +0.4 61,960 + rfbG Synpcc7942_0061 0.54 -0.8 61,970 + rfbG Synpcc7942_0061 0.55 +1.5 61,970 + rfbG Synpcc7942_0061 0.55 -2.4 61,978 - rfbG Synpcc7942_0061 0.55 -1.1 61,982 + rfbG Synpcc7942_0061 0.56 +0.5 61,984 + rfbG Synpcc7942_0061 0.56 -1.0 61,984 + rfbG Synpcc7942_0061 0.56 -0.6 61,990 + rfbG Synpcc7942_0061 0.56 +1.1 61,990 - rfbG Synpcc7942_0061 0.56 -0.7 61,990 - rfbG Synpcc7942_0061 0.56 +1.0 61,992 - rfbG Synpcc7942_0061 0.57 +0.8 62,025 + rfbG Synpcc7942_0061 0.60 +0.3 62,031 - rfbG Synpcc7942_0061 0.60 +1.1 62,031 - rfbG Synpcc7942_0061 0.60 -0.8 62,031 - rfbG Synpcc7942_0061 0.60 -1.6 62,060 - rfbG Synpcc7942_0061 0.63 -1.1 62,060 - rfbG Synpcc7942_0061 0.63 -0.6 62,086 - rfbG Synpcc7942_0061 0.65 -1.2 62,086 - rfbG Synpcc7942_0061 0.65 -0.7 62,086 - rfbG Synpcc7942_0061 0.65 -0.4 62,086 - rfbG Synpcc7942_0061 0.65 -0.6 62,096 + rfbG Synpcc7942_0061 0.66 +0.5 62,115 + rfbG Synpcc7942_0061 0.68 +0.1 62,130 + rfbG Synpcc7942_0061 0.69 -0.8 62,147 + rfbG Synpcc7942_0061 0.71 -1.0 62,170 - rfbG Synpcc7942_0061 0.73 +1.6 62,176 + rfbG Synpcc7942_0061 0.73 -0.2 62,184 - rfbG Synpcc7942_0061 0.74 -0.5 62,184 - rfbG Synpcc7942_0061 0.74 +0.1 62,195 + rfbG Synpcc7942_0061 0.75 -0.9 62,203 - rfbG Synpcc7942_0061 0.76 +0.1 62,205 - rfbG Synpcc7942_0061 0.76 -1.5 62,205 - rfbG Synpcc7942_0061 0.76 -0.5 62,231 - rfbG Synpcc7942_0061 0.78 -0.6 62,236 + rfbG Synpcc7942_0061 0.79 -0.7 62,249 + rfbG Synpcc7942_0061 0.80 +0.2 62,284 + rfbG Synpcc7942_0061 0.83 +0.5 62,314 + rfbG Synpcc7942_0061 0.86 -0.0 62,314 + rfbG Synpcc7942_0061 0.86 +0.5 62,314 + rfbG Synpcc7942_0061 0.86 -0.6 62,314 + -0.7 62,314 + rfbG Synpcc7942_0061 0.86 -1.2 62,314 + rfbG Synpcc7942_0061 0.86 -0.5 62,322 - rfbG Synpcc7942_0061 0.86 +1.2 62,329 - rfbG Synpcc7942_0061 0.87 -1.2 62,338 + rfbG Synpcc7942_0061 0.88 +0.6 62,355 + rfbG Synpcc7942_0061 0.89 -1.9 62,378 - -0.3 62,378 - +0.2 62,434 + -0.7 62,434 + -1.5 62,434 + +1.7 62,440 - +0.6 62,440 - -0.7 62,440 - -0.3 62,442 - +1.5 62,442 - -2.6 62,442 - +0.8 62,450 - -0.2 62,459 + -1.9 62,480 + +0.1 62,488 - -0.2 62,488 - -1.0 62,503 + +0.4 62,511 - -0.0 62,513 + +0.4 62,513 + +0.9 62,513 + -0.1 62,513 + -0.7 62,513 + -0.2 62,522 - +0.1 62,531 + -0.7 62,547 - rfbF Synpcc7942_0062 0.10 -0.3 62,578 - rfbF Synpcc7942_0062 0.14 -0.9 62,588 - rfbF Synpcc7942_0062 0.15 -1.0 62,740 - rfbF Synpcc7942_0062 0.35 -0.1 62,741 + rfbF Synpcc7942_0062 0.35 -2.4 62,753 + rfbF Synpcc7942_0062 0.37 -0.9 62,755 - rfbF Synpcc7942_0062 0.37 +0.0 62,756 - rfbF Synpcc7942_0062 0.37 -2.7 62,939 - rfbF Synpcc7942_0062 0.61 -0.4 62,964 - rfbF Synpcc7942_0062 0.64 +0.3 63,181 - +0.3 63,286 + +0.8 63,563 + -0.4 63,563 + -0.4 63,571 - -1.3 63,600 - -0.8 63,623 + -1.3 63,626 - -2.6 63,626 - +0.3 63,631 - +0.5 63,631 - -0.3 63,667 - +0.6 63,748 + +0.4 63,748 + -0.1 63,750 - +0.4 63,756 - -0.3 63,774 + +1.1 63,782 - +0.8 63,814 + -1.6 63,819 - +1.4 63,821 - +2.3 63,842 + +0.5 63,873 - -0.8 63,892 + -0.0 63,908 + -0.2 63,916 - -0.2 63,922 - +1.3 63,969 - -1.4 63,969 - -2.0 63,971 + +1.5 63,976 + -1.7 63,978 + -2.0 63,978 + -1.3 63,978 + +0.8 63,979 - -1.3 63,981 + +1.4 63,986 + -0.2 63,989 - -0.1 63,991 - +0.5 63,994 - -1.4 63,994 - -0.2 63,994 - -1.9 63,994 - +0.7 63,996 + -0.6 63,996 + +0.5 64,004 - -0.7 64,004 - +1.0 64,010 + -0.3 64,018 - +0.6 64,025 + -1.7 64,038 - +0.8 64,079 + +0.7 64,085 - +0.6 64,087 - -0.3 64,106 + +0.5 64,160 + +0.1 64,168 - -2.6 64,168 - -2.1 64,171 + -0.2 64,179 - +0.7 64,193 - -1.1 64,193 - +0.5 64,193 - +0.0 64,196 + -0.4 64,196 + +0.8
Or see this region's nucleotide sequence