Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23340 and HSERO_RS23345 are separated by 24 nucleotides HSERO_RS23345 and HSERO_RS23350 are separated by 13 nucleotides HSERO_RS23350 and HSERO_RS23355 are separated by 15 nucleotides HSERO_RS23355 and HSERO_RS23360 are separated by 122 nucleotides
HSERO_RS23340: HSERO_RS23340 - lipoprotein, at 5,357,604 to 5,358,740
_RS23340
HSERO_RS23345: HSERO_RS23345 - 16S rRNA methyltransferase, at 5,358,765 to 5,359,700
_RS23345
HSERO_RS23350: HSERO_RS23350 - glycosylase, at 5,359,714 to 5,360,997
_RS23350
HSERO_RS23355: HSERO_RS23355 - hypothetical protein, at 5,361,013 to 5,361,381
_RS23355
HSERO_RS23360: HSERO_RS23360 - phosphoheptose isomerase, at 5,361,504 to 5,362,100
_RS23360
Position (kb) 5359
5360
5361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5358.722 kb on + strand at 5358.799 kb on - strand at 5358.859 kb on + strand, within HSERO_RS23345 at 5358.959 kb on + strand, within HSERO_RS23345 at 5359.134 kb on + strand, within HSERO_RS23345 at 5359.135 kb on + strand, within HSERO_RS23345 at 5359.167 kb on + strand at 5359.376 kb on + strand, within HSERO_RS23345 at 5359.550 kb on - strand, within HSERO_RS23345 at 5359.576 kb on - strand, within HSERO_RS23345 at 5359.591 kb on - strand, within HSERO_RS23345 at 5360.083 kb on - strand, within HSERO_RS23350 at 5360.140 kb on + strand, within HSERO_RS23350 at 5360.583 kb on + strand, within HSERO_RS23350 at 5360.670 kb on + strand, within HSERO_RS23350 at 5360.676 kb on + strand, within HSERO_RS23350 at 5360.804 kb on + strand, within HSERO_RS23350 at 5360.810 kb on - strand, within HSERO_RS23350 at 5360.812 kb on - strand, within HSERO_RS23350 at 5360.814 kb on + strand, within HSERO_RS23350 at 5360.984 kb on - strand at 5361.026 kb on - strand at 5361.184 kb on - strand, within HSERO_RS23355 at 5361.222 kb on - strand, within HSERO_RS23355
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 5,358,722 + -0.1 5,358,799 - +0.5 5,358,859 + HSERO_RS23345 0.10 -0.7 5,358,959 + HSERO_RS23345 0.21 -0.0 5,359,134 + HSERO_RS23345 0.39 -1.0 5,359,135 + HSERO_RS23345 0.40 -0.5 5,359,167 + +1.9 5,359,376 + HSERO_RS23345 0.65 -0.2 5,359,550 - HSERO_RS23345 0.84 -0.9 5,359,576 - HSERO_RS23345 0.87 +0.1 5,359,591 - HSERO_RS23345 0.88 -0.9 5,360,083 - HSERO_RS23350 0.29 +0.5 5,360,140 + HSERO_RS23350 0.33 -0.3 5,360,583 + HSERO_RS23350 0.68 +0.8 5,360,670 + HSERO_RS23350 0.74 -1.1 5,360,676 + HSERO_RS23350 0.75 +0.5 5,360,804 + HSERO_RS23350 0.85 +0.2 5,360,810 - HSERO_RS23350 0.85 +0.8 5,360,812 - HSERO_RS23350 0.86 -0.4 5,360,814 + HSERO_RS23350 0.86 +0.8 5,360,984 - -2.8 5,361,026 - -0.3 5,361,184 - HSERO_RS23355 0.46 +1.6 5,361,222 - HSERO_RS23355 0.57 +1.1
Or see this region's nucleotide sequence