Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS23340

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS23335 and HSERO_RS23340 are separated by 214 nucleotidesHSERO_RS23340 and HSERO_RS23345 are separated by 24 nucleotidesHSERO_RS23345 and HSERO_RS23350 are separated by 13 nucleotides HSERO_RS23335: HSERO_RS23335 - cell wall shape-determining protein, at 5,356,280 to 5,357,389 _RS23335 HSERO_RS23340: HSERO_RS23340 - lipoprotein, at 5,357,604 to 5,358,740 _RS23340 HSERO_RS23345: HSERO_RS23345 - 16S rRNA methyltransferase, at 5,358,765 to 5,359,700 _RS23345 HSERO_RS23350: HSERO_RS23350 - glycosylase, at 5,359,714 to 5,360,997 _RS23350 Position (kb) 5357 5358 5359Strain fitness (log2 ratio) -1 0 1 2at 5357.410 kb on + strandat 5357.699 kb on + strandat 5358.137 kb on + strand, within HSERO_RS23340at 5358.137 kb on + strand, within HSERO_RS23340at 5358.137 kb on + strand, within HSERO_RS23340at 5358.174 kb on - strand, within HSERO_RS23340at 5358.446 kb on + strand, within HSERO_RS23340at 5358.484 kb on - strand, within HSERO_RS23340at 5358.649 kb on - strandat 5358.722 kb on + strandat 5358.799 kb on - strandat 5358.859 kb on + strand, within HSERO_RS23345at 5358.959 kb on + strand, within HSERO_RS23345at 5359.134 kb on + strand, within HSERO_RS23345at 5359.135 kb on + strand, within HSERO_RS23345at 5359.167 kb on + strandat 5359.376 kb on + strand, within HSERO_RS23345at 5359.550 kb on - strand, within HSERO_RS23345at 5359.576 kb on - strand, within HSERO_RS23345at 5359.591 kb on - strand, within HSERO_RS23345

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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5,357,410 + -0.3
5,357,699 + +0.5
5,358,137 + HSERO_RS23340 0.47 -0.5
5,358,137 + HSERO_RS23340 0.47 +0.7
5,358,137 + HSERO_RS23340 0.47 +0.4
5,358,174 - HSERO_RS23340 0.50 +1.2
5,358,446 + HSERO_RS23340 0.74 +0.2
5,358,484 - HSERO_RS23340 0.77 -0.1
5,358,649 - +0.2
5,358,722 + -0.1
5,358,799 - +0.5
5,358,859 + HSERO_RS23345 0.10 -0.7
5,358,959 + HSERO_RS23345 0.21 -0.0
5,359,134 + HSERO_RS23345 0.39 -1.0
5,359,135 + HSERO_RS23345 0.40 -0.5
5,359,167 + +1.9
5,359,376 + HSERO_RS23345 0.65 -0.2
5,359,550 - HSERO_RS23345 0.84 -0.9
5,359,576 - HSERO_RS23345 0.87 +0.1
5,359,591 - HSERO_RS23345 0.88 -0.9

Or see this region's nucleotide sequence