Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19345

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,434,418	-		HSERO_RS19335	0.65	+5.0
4,434,418	-		HSERO_RS19335	0.65	+0.0
4,434,481	-		HSERO_RS19335	0.74	-2.0
4,434,532	+		HSERO_RS19335	0.82	+0.9
4,434,573	-		HSERO_RS19335	0.88	+0.3
4,434,799	+		HSERO_RS19340	0.20	-0.1
4,434,825	+		HSERO_RS19340	0.24	-0.4
4,434,848	-		HSERO_RS19340	0.28	-0.1
4,434,907	+		HSERO_RS19340	0.37	+1.7
4,434,915	-		HSERO_RS19340	0.38	-0.7
4,434,938	-				-0.7
4,435,006	-		HSERO_RS19340	0.52	+0.1
4,435,018	+		HSERO_RS19340	0.54	-0.1
4,435,042	+		HSERO_RS19340	0.58	-0.0
4,435,185	+		HSERO_RS19340	0.80	-0.2
4,435,218	+		HSERO_RS19340	0.85	-0.0
4,435,317	+				+1.3
4,435,354	+				+0.1
4,435,396	-		HSERO_RS19345	0.13	-1.1
4,435,426	-		HSERO_RS19345	0.17	+0.2
4,435,487	-		HSERO_RS19345	0.25	-0.2
4,435,517	+		HSERO_RS19345	0.30	-0.7
4,435,565	+		HSERO_RS19345	0.36	+0.0
4,435,727	-		HSERO_RS19345	0.58	-0.3
4,435,764	+		HSERO_RS19345	0.63	+0.6
4,435,802	+		HSERO_RS19345	0.68	-0.7
4,435,814	+		HSERO_RS19345	0.70	-1.3
4,435,867	+		HSERO_RS19345	0.77	-0.9
4,436,109	+				+0.3
4,436,243	+		HSERO_RS19350	0.19	+0.3
4,436,454	-		HSERO_RS19350	0.45	+0.8
4,436,501	+		HSERO_RS19350	0.51	+0.0
4,436,637	+		HSERO_RS19350	0.67	-0.3
4,436,642	+		HSERO_RS19350	0.68	-2.1
4,436,761	+		HSERO_RS19350	0.83	+1.4
4,436,863	+				+0.2
4,436,871	-				+0.1
4,436,874	+				+0.0