Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19095

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,379,697	+		HSERO_RS19090	0.61	+0.4
4,379,781	-		HSERO_RS19090	0.68	-0.0
4,380,067	-		HSERO_RS19090	0.90	+0.4
4,380,314	+				+1.3
4,380,389	+				+0.7
4,380,402	+				-1.2
4,380,437	+				-0.3
4,380,714	+		HSERO_RS19095	0.12	-0.3
4,380,886	-		HSERO_RS19095	0.26	-1.2
4,380,908	-		HSERO_RS19095	0.28	-1.0
4,380,913	-		HSERO_RS19095	0.28	-0.0
4,380,939	+		HSERO_RS19095	0.31	-0.6
4,381,318	-		HSERO_RS19095	0.61	-0.6
4,381,444	+		HSERO_RS19095	0.71	-0.0
4,381,444	+		HSERO_RS19095	0.71	-0.4
4,381,580	-		HSERO_RS19095	0.82	-1.6
4,381,664	+		HSERO_RS19095	0.89	-1.1
4,381,862	-				+1.0
4,382,042	+		HSERO_RS19100	0.20	-0.8
4,382,203	-		HSERO_RS19100	0.35	-0.9
4,382,398	-		HSERO_RS19100	0.53	-0.8
4,382,550	-		HSERO_RS19100	0.67	-0.3
4,382,559	+		HSERO_RS19100	0.68	-0.5
4,382,580	+		HSERO_RS19100	0.70	-1.7
4,382,580	+		HSERO_RS19100	0.70	+0.0
4,382,693	-		HSERO_RS19100	0.80	-1.8
4,382,723	-		HSERO_RS19100	0.83	-0.4
4,382,788	+		HSERO_RS19100	0.89	-0.6