Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18055

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,149,158	-		HSERO_RS18050	0.32	-0.0
4,149,199	+		HSERO_RS18050	0.38	-1.2
4,149,380	+		HSERO_RS18050	0.62	+1.0
4,149,380	+		HSERO_RS18050	0.62	-0.8
4,149,653	+				-0.6
4,149,686	+				-0.9
4,149,703	+				-0.0
4,149,703	+				+0.4
4,149,711	-				+3.0
4,149,711	-				-1.5
4,149,713	+				+0.9
4,149,721	-				-0.2
4,149,918	+				+1.0
4,149,928	+				-0.6
4,149,965	+				-2.0
4,150,038	+				-0.5
4,150,046	-				+0.1
4,150,150	-				+0.1
4,150,158	-				-0.4
4,150,195	+				-0.6
4,150,219	+				+0.1
4,150,253	-				-0.1
4,150,489	-		HSERO_RS18055	0.29	+1.3
4,150,620	+		HSERO_RS18055	0.40	-0.5
4,150,685	+		HSERO_RS18055	0.46	+0.0
4,150,832	+		HSERO_RS18055	0.59	-0.2
4,150,832	+		HSERO_RS18055	0.59	-0.4
4,150,840	-		HSERO_RS18055	0.60	+0.7
4,150,851	-		HSERO_RS18055	0.61	-0.6
4,150,856	-		HSERO_RS18055	0.61	+0.7
4,150,880	+		HSERO_RS18055	0.63	+0.4
4,150,888	-		HSERO_RS18055	0.64	-1.7
4,150,888	-		HSERO_RS18055	0.64	-0.1
4,150,913	-		HSERO_RS18055	0.66	-0.8
4,150,935	+		HSERO_RS18055	0.68	-0.4
4,151,014	+		HSERO_RS18055	0.75	-0.1
4,151,369	+				-0.7
4,151,369	+				+0.1
4,151,379	+				+0.0
4,151,516	-		HSERO_RS18060	0.25	+0.1
4,151,643	-		HSERO_RS18060	0.40	+0.1
4,151,662	+		HSERO_RS18060	0.43	-0.1
4,151,739	-		HSERO_RS18060	0.52	+0.1
4,151,761	+		HSERO_RS18060	0.55	-1.1
4,151,853	-		HSERO_RS18060	0.66	+2.4
4,151,971	+		HSERO_RS18060	0.81	-0.5
4,151,979	-		HSERO_RS18060	0.82	-0.2
4,152,169	-				-0.3
4,152,257	+				-0.0
4,152,300	+				-0.3