Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17350

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,979,145	+				+0.7
3,979,175	+				+1.6
3,979,202	-				-0.2
3,979,319	-				+1.0
3,979,389	-				-0.3
3,979,465	+		HSERO_RS17345	0.11	+0.9
3,979,465	+		HSERO_RS17345	0.11	-0.8
3,979,499	+		HSERO_RS17345	0.17	-0.1
3,979,627	+		HSERO_RS17345	0.42	-1.3
3,979,642	+		HSERO_RS17345	0.45	-1.3
3,979,660	-				+0.3
3,979,764	-		HSERO_RS17345	0.69	-0.9
3,979,799	+		HSERO_RS17345	0.76	-0.3
3,979,872	+				+0.8
3,979,880	-				+0.5
3,979,891	+				+0.4
3,979,891	+				-0.7
3,979,891	+				-0.8
3,979,899	-				+0.2
3,979,903	+				+0.4
3,979,932	+				-0.4
3,979,940	-				-0.1
3,979,949	-				-0.3
3,979,992	+				-0.0
3,979,993	-				+0.0
3,980,058	-				-0.3
3,980,062	+				-0.0
3,980,065	-				-1.1
3,980,067	+				-0.5
3,980,075	-				+1.6
3,980,081	-				-0.4
3,980,081	-				-0.0
3,980,091	+				-0.2
3,980,091	+				-0.2
3,980,126	-				-0.6
3,980,144	+				+0.8
3,980,257	+		HSERO_RS17350	0.11	-0.1
3,980,257	+		HSERO_RS17350	0.11	-0.2
3,980,349	+		HSERO_RS17350	0.19	-1.3
3,980,396	+		HSERO_RS17350	0.23	+1.1
3,980,438	+		HSERO_RS17350	0.27	-0.4
3,980,529	-		HSERO_RS17350	0.35	+0.8
3,980,598	-		HSERO_RS17350	0.41	-0.3
3,980,598	-		HSERO_RS17350	0.41	+0.7
3,980,882	-		HSERO_RS17350	0.66	-0.3
3,980,889	-		HSERO_RS17350	0.67	-0.3
3,981,043	+		HSERO_RS17350	0.80	-0.3
3,981,073	+		HSERO_RS17350	0.83	+0.3
3,981,096	+		HSERO_RS17350	0.85	-1.7
3,981,096	+		HSERO_RS17350	0.85	-1.3
3,981,107	+		HSERO_RS17350	0.86	+0.4
3,981,256	-				-0.1
3,981,263	-				+1.1
3,981,495	-				+1.2
3,981,812	-				-0.9
3,981,822	-				+1.4
3,981,824	+				-0.6
3,981,946	+				-0.6
3,981,959	+				-0.5
3,981,969	+				-0.0
3,982,076	+		HSERO_RS17360	0.11	-0.4
3,982,130	+		HSERO_RS17360	0.22	-1.2
3,982,212	+		HSERO_RS17360	0.39	-0.1
3,982,256	-		HSERO_RS17360	0.47	+0.0