Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16910

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,869,075	-				-0.3
3,869,080	+				-0.8
3,869,098	-				+0.1
3,869,116	-				+0.3
3,869,191	+		HSERO_RS16905	0.26	-0.2
3,869,226	+		HSERO_RS16905	0.33	-0.1
3,869,236	+		HSERO_RS16905	0.35	-0.0
3,869,425	+				+1.1
3,869,425	+		HSERO_RS16905	0.75	-1.0
3,869,433	-		HSERO_RS16905	0.77	-0.8
3,869,775	-				+2.1
3,869,903	+				-0.1
3,870,117	-		HSERO_RS16910	0.48	+0.9
3,870,117	-		HSERO_RS16910	0.48	+0.1
3,870,119	+		HSERO_RS16910	0.48	-0.1
3,870,119	+		HSERO_RS16910	0.48	-0.2
3,870,299	-		HSERO_RS16910	0.87	+0.7
3,870,353	+				+0.6
3,870,360	+				+0.2
3,870,399	+				-0.3
3,870,465	-				-0.7
3,870,534	+		HSERO_RS16915	0.12	+0.7
3,870,614	-		HSERO_RS16915	0.19	-0.0
3,870,711	+		HSERO_RS16915	0.28	+0.4
3,870,742	-		HSERO_RS16915	0.30	-1.1
3,870,749	-		HSERO_RS16915	0.31	+1.3
3,871,298	-		HSERO_RS16915	0.80	-0.4
3,871,300	+		HSERO_RS16915	0.80	-0.0
3,871,308	-		HSERO_RS16915	0.81	+0.6
3,871,353	-		HSERO_RS16915	0.85	+0.2