Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16390

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS16380 and HSERO_RS16385 are separated by 16 nucleotidesHSERO_RS16385 and HSERO_RS16390 are separated by 18 nucleotidesHSERO_RS16390 and HSERO_RS16395 are separated by 61 nucleotides HSERO_RS16380: HSERO_RS16380 - hypothetical protein, at 3,751,157 to 3,751,744 _RS16380 HSERO_RS16385: HSERO_RS16385 - beta-lactamase, at 3,751,761 to 3,752,546 _RS16385 HSERO_RS16390: HSERO_RS16390 - lipoprotein, at 3,752,565 to 3,753,746 _RS16390 HSERO_RS16395: HSERO_RS16395 - dihydrodipicolinate synthase, at 3,753,808 to 3,754,686 _RS16395 Position (kb) 3752 3753 3754Strain fitness (log2 ratio) -1 0 1at 3751.934 kb on + strand, within HSERO_RS16385at 3751.935 kb on - strand, within HSERO_RS16385at 3752.386 kb on - strand, within HSERO_RS16385at 3752.420 kb on - strand, within HSERO_RS16385

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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3,751,934 + HSERO_RS16385 0.22 +1.2
3,751,935 - HSERO_RS16385 0.22 -1.4
3,752,386 - HSERO_RS16385 0.80 +0.9
3,752,420 - HSERO_RS16385 0.84 +0.4

Or see this region's nucleotide sequence