Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16385

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,750,783	+				+0.1
3,750,812	-				+0.8
3,750,813	-				-0.1
3,750,813	-				+0.1
3,750,854	+				+1.0
3,750,909	+				+0.5
3,750,966	+				+0.9
3,751,009	+				+0.4
3,751,022	+				-0.4
3,751,022	+				+1.4
3,751,022	+				+0.1
3,751,022	+				+0.6
3,751,022	+				+0.4
3,751,022	+				-0.5
3,751,022	+				-1.1
3,751,022	+				-0.5
3,751,022	+				-0.1
3,751,022	+				+0.3
3,751,030	+				+0.0
3,751,030	+				-1.8
3,751,030	+				+0.1
3,751,030	+				-0.1
3,751,030	+				-0.3
3,751,030	+				-0.6
3,751,030	+				+0.5
3,751,030	+				+0.7
3,751,030	+				+0.1
3,751,030	+				-0.5
3,751,030	+				+0.2
3,751,030	+				-0.1
3,751,030	+				+0.1
3,751,030	-				-0.8
3,751,030	-				+0.9
3,751,030	-				+2.5
3,751,030	-				+0.4
3,751,031	-				+0.0
3,751,037	-				-0.3
3,751,037	-				+0.0
3,751,037	-				+1.2
3,751,038	-				+0.2
3,751,038	-				+0.2
3,751,038	-				+0.3
3,751,038	-				-0.6
3,751,038	-				+0.2
3,751,038	-				+0.7
3,751,038	-				-2.1
3,751,043	-				+0.3
3,751,050	+				+0.0
3,751,142	+				+0.5
3,751,154	+				-1.0
3,751,159	+				+0.2
3,751,161	-				-0.5
3,751,463	+		HSERO_RS16380	0.52	+0.4
3,751,471	-		HSERO_RS16380	0.53	+0.3
3,751,481	+		HSERO_RS16380	0.55	-0.1
3,751,934	+		HSERO_RS16385	0.22	+1.2
3,751,935	-		HSERO_RS16385	0.22	-1.4
3,752,386	-		HSERO_RS16385	0.80	+0.9
3,752,420	-		HSERO_RS16385	0.84	+0.4