Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16010

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,656,064	+		HSERO_RS16005	0.26	-0.2
3,656,064	+		HSERO_RS16005	0.26	+0.3
3,656,064	+		HSERO_RS16005	0.26	-0.2
3,656,064	+		HSERO_RS16005	0.26	+1.0
3,656,064	+		HSERO_RS16005	0.26	-0.0
3,656,064	+		HSERO_RS16005	0.26	-1.0
3,656,064	+		HSERO_RS16005	0.26	+2.4
3,656,072	-		HSERO_RS16005	0.27	+0.2
3,656,072	-		HSERO_RS16005	0.27	-0.3
3,656,072	-		HSERO_RS16005	0.27	-1.2
3,656,072	-		HSERO_RS16005	0.27	+0.2
3,656,072	-		HSERO_RS16005	0.27	+1.3
3,656,072	-		HSERO_RS16005	0.27	-0.2
3,656,221	-				+0.7
3,656,460	+		HSERO_RS16005	0.63	+0.4
3,656,507	+		HSERO_RS16005	0.68	-0.3
3,656,522	+		HSERO_RS16005	0.69	+1.1
3,656,724	+		HSERO_RS16005	0.88	-0.2
3,656,724	+		HSERO_RS16005	0.88	-0.6
3,656,732	-		HSERO_RS16005	0.89	+0.5
3,656,732	-		HSERO_RS16005	0.89	+0.2
3,656,755	-				-0.2
3,656,762	-				-0.1
3,656,917	+				+0.7
3,656,925	-				+0.3
3,656,932	+				-0.1
3,656,932	+				+1.3
3,657,029	+				-0.3
3,657,148	+		HSERO_RS16010	0.17	-0.9
3,657,293	-		HSERO_RS16010	0.41	+0.1
3,657,380	+		HSERO_RS16010	0.55	-0.7
3,657,452	+		HSERO_RS16010	0.66	-1.7
3,657,463	+		HSERO_RS16010	0.68	-0.5
3,657,463	+		HSERO_RS16010	0.68	-0.4
3,657,471	-		HSERO_RS16010	0.69	-0.8
3,657,632	+				+0.9
3,657,811	-				-0.1
3,657,893	+				-0.9
3,657,893	+				-1.5
3,657,980	-				-0.0
3,658,020	+				-0.1
3,658,065	+		HSERO_RS16015	0.13	-0.1
3,658,087	+		HSERO_RS16015	0.15	-0.8
3,658,191	+		HSERO_RS16015	0.25	+0.6
3,658,372	+		HSERO_RS16015	0.42	-1.8
3,658,380	-		HSERO_RS16015	0.42	-1.0
3,658,380	-		HSERO_RS16015	0.42	-1.3
3,658,509	+		HSERO_RS16015	0.55	+0.4
3,658,599	-		HSERO_RS16015	0.63	-0.1