Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15915

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,631,441	+		HSERO_RS15905	0.55	-1.5
3,631,520	-		HSERO_RS15905	0.70	+0.2
3,631,560	-		HSERO_RS15905	0.78	+0.9
3,631,596	+		HSERO_RS15905	0.84	+0.8
3,631,733	-				+0.1
3,631,743	-				-0.9
3,632,083	+				-0.4
3,632,297	+				-1.0
3,632,446	+				-0.9
3,632,471	+		HSERO_RS15915	0.13	-0.5
3,632,518	+		HSERO_RS15915	0.20	+0.6
3,632,610	-		HSERO_RS15915	0.34	+2.4
3,632,619	-		HSERO_RS15915	0.35	+0.3
3,632,733	-		HSERO_RS15915	0.52	+1.2
3,632,789	+		HSERO_RS15915	0.61	+1.0
3,632,862	+		HSERO_RS15915	0.72	-0.1
3,633,170	+				+1.0
3,633,202	+				+0.4
3,633,227	+				+0.0
3,633,230	-				+0.1
3,633,252	+				-0.1
3,633,329	-				-0.0
3,633,369	+				-0.5
3,633,377	-				+0.2
3,633,392	-				+0.8
3,633,529	-		HSERO_RS15920	0.29	+0.6
3,633,547	-		HSERO_RS15920	0.34	+0.1
3,633,585	+		HSERO_RS15920	0.46	+0.0
3,633,636	-		HSERO_RS15920	0.60	+0.1
3,633,681	+		HSERO_RS15920	0.73	-1.4
3,633,692	+		HSERO_RS15920	0.77	+0.9
3,633,702	+		HSERO_RS15920	0.79	+0.3
3,633,710	-		HSERO_RS15920	0.82	-0.3
3,633,710	-		HSERO_RS15920	0.82	-0.2
3,633,712	+		HSERO_RS15920	0.82	+0.4
3,633,748	+				+0.4
3,633,775	-				-0.3
3,633,884	+				+0.1
3,633,998	+				-2.1
3,634,006	-				+0.6