Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12690

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,891,224	+				+0.4
2,891,232	-				+0.3
2,891,497	-		HSERO_RS12685	0.18	+0.5
2,891,575	-		HSERO_RS12685	0.33	+1.5
2,891,764	-		HSERO_RS12685	0.69	+0.7
2,891,918	-				+2.5
2,892,287	-		HSERO_RS12690	0.16	-1.2
2,892,390	-		HSERO_RS12690	0.29	-0.7
2,893,122	-		HSERO_RS12695	0.17	+0.5
2,893,414	+		HSERO_RS12695	0.55	-0.5
2,893,434	+		HSERO_RS12695	0.57	-1.4
2,893,484	+		HSERO_RS12695	0.64	-0.2
2,893,512	-		HSERO_RS12695	0.67	-1.8
2,893,531	+		HSERO_RS12695	0.70	+0.8
2,893,604	-		HSERO_RS12695	0.79	-0.4
2,893,810	+				-0.5
2,893,899	+		HSERO_RS12700	0.11	+0.9