Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09785

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,216,968	+		HSERO_RS09775	0.84	-2.3
2,217,149	-				-2.6
2,217,370	+		HSERO_RS09780	0.41	-2.1
2,217,639	-		HSERO_RS09780	0.83	-0.0
2,217,708	-				+0.0
2,217,846	-		HSERO_RS09785	0.14	+0.7
2,217,883	-		HSERO_RS09785	0.19	-0.2
2,217,888	+		HSERO_RS09785	0.20	+0.3
2,218,005	+		HSERO_RS09785	0.38	+0.2
2,218,039	+		HSERO_RS09785	0.43	+0.4
2,218,058	-		HSERO_RS09785	0.46	-0.7
2,218,143	-		HSERO_RS09785	0.59	-1.5
2,218,204	-		HSERO_RS09785	0.69	-0.5
2,218,621	+		HSERO_RS09790	0.15	-0.3
2,218,684	-		HSERO_RS09790	0.19	-0.1
2,218,698	-		HSERO_RS09790	0.20	-0.3
2,218,713	-		HSERO_RS09790	0.21	-0.7
2,218,715	+		HSERO_RS09790	0.22	+1.6
2,218,847	-		HSERO_RS09790	0.31	-0.8
2,218,956	+		HSERO_RS09790	0.39	-0.8
2,218,956	+		HSERO_RS09790	0.39	+0.3
2,218,956	+		HSERO_RS09790	0.39	+0.4
2,218,967	+		HSERO_RS09790	0.40	+0.7
2,218,996	-		HSERO_RS09790	0.42	+0.1
2,219,171	+		HSERO_RS09790	0.54	-0.3
2,219,296	+		HSERO_RS09790	0.63	-0.9