Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09125

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,070,688	-				-0.3
2,070,690	+				+0.8
2,070,773	+				+0.1
2,070,901	+		HSERO_RS09115	0.34	+1.5
2,070,906	+		HSERO_RS09115	0.35	+0.1
2,071,024	-		HSERO_RS09115	0.59	-0.1
2,071,110	+		HSERO_RS09115	0.77	+0.1
2,071,110	+		HSERO_RS09115	0.77	+0.1
2,071,110	+		HSERO_RS09115	0.77	+3.6
2,071,239	-				+0.1
2,071,276	-		HSERO_RS09120	0.19	-0.1
2,071,356	+				+1.6
2,071,483	+				+0.1
2,071,491	-				-0.8
2,071,491	-				-0.6
2,071,491	-				+0.6
2,071,491	-				-0.0
2,071,503	+				-0.9
2,072,411	-		HSERO_RS09125	0.50	+1.0
2,072,475	+		HSERO_RS09125	0.54	+1.1
2,072,555	-		HSERO_RS09125	0.59	+1.4
2,072,693	-		HSERO_RS09125	0.69	+1.3
2,072,731	-		HSERO_RS09125	0.71	+0.8
2,072,774	-		HSERO_RS09125	0.74	+0.2
2,072,864	+		HSERO_RS09125	0.80	+0.5
2,072,952	+		HSERO_RS09125	0.86	+0.1
2,072,958	-		HSERO_RS09125	0.87	+0.5
2,073,485	+		HSERO_RS09130	0.30	-1.5
2,073,540	-		HSERO_RS09130	0.36	-0.2
2,073,729	-		HSERO_RS09130	0.53	+1.0
2,073,738	-		HSERO_RS09130	0.54	+0.3
2,073,740	+		HSERO_RS09130	0.54	+0.0
2,073,797	+		HSERO_RS09130	0.59	-0.5
2,073,814	-				-0.8
2,073,872	-		HSERO_RS09130	0.66	+0.0
2,073,880	-		HSERO_RS09130	0.67	-0.7