Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04670

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,015,696	-		HSERO_RS04660	0.61	-0.5
1,015,801	+		HSERO_RS04660	0.77	+0.6
1,015,801	+		HSERO_RS04660	0.77	-0.7
1,015,847	-		HSERO_RS04660	0.83	-0.3
1,015,992	+				+0.3
1,015,997	+				+0.1
1,015,997	+				+0.1
1,016,002	+				-0.2
1,016,002	+				+0.1
1,016,024	+				+0.4
1,016,029	+				+0.2
1,016,057	+				+0.4
1,016,277	-		HSERO_RS04665	0.43	+0.5
1,016,438	+		HSERO_RS04665	0.70	+0.4
1,016,438	+		HSERO_RS04665	0.70	+0.0
1,016,580	+				-1.1
1,016,696	+				+0.4
1,016,730	+				-1.9
1,016,738	-				-0.2
1,016,797	-				-0.2
1,017,081	-		HSERO_RS04670	0.26	-0.5
1,017,413	-		HSERO_RS04670	0.48	+0.1
1,017,920	-		HSERO_RS04670	0.81	-0.3
1,017,949	+		HSERO_RS04670	0.83	-0.3
1,018,174	+				+0.4
1,018,386	-				-0.0
1,018,473	-				-0.3
1,018,542	-				+0.9
1,018,589	+				-1.0
1,018,589	+				+0.1
1,018,589	+				-1.0
1,018,589	+				-0.3
1,018,597	-				+0.1
1,018,597	-				-0.3
1,018,597	-				-0.0
1,018,609	-				-1.1
1,018,711	-				+0.7
1,018,872	-		HSERO_RS04675	0.24	+0.4
1,018,878	+		HSERO_RS04675	0.24	-1.1
1,018,969	-		HSERO_RS04675	0.34	-0.5