Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04280 and HSERO_RS04285 are separated by 140 nucleotides HSERO_RS04285 and HSERO_RS04290 are separated by 239 nucleotides
HSERO_RS04280: HSERO_RS04280 - tRNA threonylcarbamoyladenosine modification protein TsaD, at 939,141 to 940,205
_RS04280
HSERO_RS04285: HSERO_RS04285 - glycosyl transferase, at 940,346 to 941,356
_RS04285
HSERO_RS04290: HSERO_RS04290 - DNA-binding protein, at 941,596 to 942,048
_RS04290
Position (kb) 940
941
942 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 940.302 kb on + strand at 940.333 kb on - strand at 940.344 kb on - strand at 940.344 kb on - strand at 940.586 kb on + strand, within HSERO_RS04285 at 940.680 kb on + strand, within HSERO_RS04285 at 940.722 kb on + strand, within HSERO_RS04285 at 940.814 kb on + strand, within HSERO_RS04285 at 940.822 kb on - strand, within HSERO_RS04285 at 940.822 kb on - strand, within HSERO_RS04285 at 940.849 kb on + strand, within HSERO_RS04285 at 940.849 kb on + strand, within HSERO_RS04285 at 940.856 kb on + strand, within HSERO_RS04285 at 940.857 kb on - strand at 940.946 kb on + strand, within HSERO_RS04285 at 940.949 kb on - strand, within HSERO_RS04285 at 940.970 kb on - strand, within HSERO_RS04285 at 941.026 kb on - strand, within HSERO_RS04285 at 941.099 kb on - strand, within HSERO_RS04285 at 941.273 kb on + strand at 941.273 kb on + strand at 941.318 kb on + strand at 941.318 kb on + strand at 941.371 kb on + strand at 941.380 kb on + strand at 941.400 kb on - strand at 941.402 kb on - strand at 941.434 kb on + strand at 941.457 kb on - strand at 941.532 kb on - strand at 941.553 kb on + strand at 941.670 kb on + strand, within HSERO_RS04290 at 941.700 kb on - strand, within HSERO_RS04290 at 941.742 kb on - strand, within HSERO_RS04290 at 941.861 kb on + strand, within HSERO_RS04290 at 941.917 kb on + strand, within HSERO_RS04290 at 941.981 kb on + strand, within HSERO_RS04290 at 942.261 kb on - strand at 942.273 kb on + strand at 942.281 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 940,302 + -0.1 940,333 - +0.0 940,344 - +1.8 940,344 - +0.3 940,586 + HSERO_RS04285 0.24 +0.1 940,680 + HSERO_RS04285 0.33 +0.7 940,722 + HSERO_RS04285 0.37 +0.6 940,814 + HSERO_RS04285 0.46 +0.0 940,822 - HSERO_RS04285 0.47 -0.7 940,822 - HSERO_RS04285 0.47 -0.3 940,849 + HSERO_RS04285 0.50 -0.5 940,849 + HSERO_RS04285 0.50 -0.5 940,856 + HSERO_RS04285 0.50 -0.6 940,857 - -2.1 940,946 + HSERO_RS04285 0.59 -0.7 940,949 - HSERO_RS04285 0.60 -0.6 940,970 - HSERO_RS04285 0.62 -0.5 941,026 - HSERO_RS04285 0.67 +2.0 941,099 - HSERO_RS04285 0.74 -0.9 941,273 + +1.2 941,273 + -1.0 941,318 + -1.2 941,318 + +0.8 941,371 + +0.1 941,380 + -2.0 941,400 - -1.4 941,402 - -0.6 941,434 + +0.7 941,457 - +0.7 941,532 - +1.2 941,553 + -2.2 941,670 + HSERO_RS04290 0.16 +0.5 941,700 - HSERO_RS04290 0.23 +0.7 941,742 - HSERO_RS04290 0.32 -3.1 941,861 + HSERO_RS04290 0.58 -0.2 941,917 + HSERO_RS04290 0.71 -0.2 941,981 + HSERO_RS04290 0.85 -1.2 942,261 - +0.8 942,273 + +0.0 942,281 - +0.7
Or see this region's nucleotide sequence