Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02530 and HSERO_RS02535 are separated by 249 nucleotides HSERO_RS02535 and HSERO_RS02540 are separated by 66 nucleotides
HSERO_RS02530: HSERO_RS02530 - LysR family transcriptional regulator, at 556,695 to 557,579
_RS02530
HSERO_RS02535: HSERO_RS02535 - short-chain dehydrogenase, at 557,829 to 558,578
_RS02535
HSERO_RS02540: HSERO_RS02540 - ABC transporter substrate-binding protein, at 558,645 to 559,682
_RS02540
Position (kb) 557
558
559 Strain fitness (log2 ratio) -1
0
1
2
3 at 556.873 kb on + strand, within HSERO_RS02530 at 556.875 kb on + strand, within HSERO_RS02530 at 556.893 kb on + strand, within HSERO_RS02530 at 557.137 kb on - strand, within HSERO_RS02530 at 557.172 kb on - strand, within HSERO_RS02530 at 557.380 kb on + strand, within HSERO_RS02530 at 557.388 kb on - strand, within HSERO_RS02530 at 557.388 kb on - strand, within HSERO_RS02530 at 557.393 kb on - strand, within HSERO_RS02530 at 557.525 kb on - strand at 557.562 kb on + strand at 557.793 kb on - strand at 558.051 kb on + strand, within HSERO_RS02535 at 558.216 kb on + strand, within HSERO_RS02535 at 558.226 kb on + strand, within HSERO_RS02535 at 558.444 kb on + strand, within HSERO_RS02535 at 558.642 kb on - strand at 558.665 kb on + strand at 558.783 kb on + strand, within HSERO_RS02540 at 558.791 kb on - strand, within HSERO_RS02540 at 558.791 kb on - strand, within HSERO_RS02540 at 558.961 kb on - strand at 559.041 kb on + strand, within HSERO_RS02540 at 559.226 kb on + strand, within HSERO_RS02540 at 559.328 kb on + strand, within HSERO_RS02540 at 559.333 kb on + strand, within HSERO_RS02540 at 559.351 kb on - strand, within HSERO_RS02540 at 559.441 kb on - strand, within HSERO_RS02540 at 559.509 kb on + strand, within HSERO_RS02540 at 559.538 kb on - strand, within HSERO_RS02540
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 556,873 + HSERO_RS02530 0.20 -0.6 556,875 + HSERO_RS02530 0.20 -1.1 556,893 + HSERO_RS02530 0.22 +1.2 557,137 - HSERO_RS02530 0.50 +0.3 557,172 - HSERO_RS02530 0.54 +0.4 557,380 + HSERO_RS02530 0.77 +0.0 557,388 - HSERO_RS02530 0.78 -0.8 557,388 - HSERO_RS02530 0.78 -0.4 557,393 - HSERO_RS02530 0.79 +0.1 557,525 - -0.8 557,562 + +0.2 557,793 - +0.0 558,051 + HSERO_RS02535 0.30 -0.6 558,216 + HSERO_RS02535 0.52 -0.2 558,226 + HSERO_RS02535 0.53 +0.2 558,444 + HSERO_RS02535 0.82 +0.8 558,642 - +0.1 558,665 + +0.5 558,783 + HSERO_RS02540 0.13 -0.4 558,791 - HSERO_RS02540 0.14 +0.2 558,791 - HSERO_RS02540 0.14 -0.4 558,961 - +3.4 559,041 + HSERO_RS02540 0.38 +0.2 559,226 + HSERO_RS02540 0.56 -0.9 559,328 + HSERO_RS02540 0.66 +0.4 559,333 + HSERO_RS02540 0.66 +0.2 559,351 - HSERO_RS02540 0.68 -1.6 559,441 - HSERO_RS02540 0.77 -0.2 559,509 + HSERO_RS02540 0.83 +0.4 559,538 - HSERO_RS02540 0.86 -0.0
Or see this region's nucleotide sequence