Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02240 and HSERO_RS02245 are separated by 185 nucleotides HSERO_RS02245 and HSERO_RS02250 are separated by 130 nucleotides HSERO_RS02250 and HSERO_RS02255 are separated by 207 nucleotides HSERO_RS02255 and HSERO_RS02260 are separated by 0 nucleotides
HSERO_RS02240: HSERO_RS02240 - homoserine kinase, at 489,761 to 490,717
_RS02240
HSERO_RS02245: HSERO_RS02245 - hypothetical protein, at 490,903 to 491,343
_RS02245
HSERO_RS02250: HSERO_RS02250 - hypothetical protein, at 491,474 to 492,166
_RS02250
HSERO_RS02255: HSERO_RS02255 - decarboxylase, at 492,374 to 493,120
_RS02255
HSERO_RS02260: HSERO_RS02260 - DNA polymerase I, at 493,121 to 495,883
_RS02260
Position (kb) 491
492
493 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 490.909 kb on - strand at 491.043 kb on - strand, within HSERO_RS02245 at 491.075 kb on - strand, within HSERO_RS02245 at 491.095 kb on - strand, within HSERO_RS02245 at 491.326 kb on + strand at 491.392 kb on + strand at 491.446 kb on - strand at 491.495 kb on + strand at 491.503 kb on - strand at 491.713 kb on + strand, within HSERO_RS02250 at 491.850 kb on - strand, within HSERO_RS02250 at 491.945 kb on - strand, within HSERO_RS02250 at 491.960 kb on + strand, within HSERO_RS02250 at 492.018 kb on + strand, within HSERO_RS02250 at 492.123 kb on + strand at 492.124 kb on + strand at 492.175 kb on + strand at 492.270 kb on + strand at 492.270 kb on + strand at 492.370 kb on + strand at 492.390 kb on - strand at 492.395 kb on - strand at 492.480 kb on + strand, within HSERO_RS02255 at 492.564 kb on + strand, within HSERO_RS02255 at 492.855 kb on - strand, within HSERO_RS02255 at 492.987 kb on - strand, within HSERO_RS02255
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 490,909 - -0.1 491,043 - HSERO_RS02245 0.32 -0.4 491,075 - HSERO_RS02245 0.39 +0.9 491,095 - HSERO_RS02245 0.44 +3.8 491,326 + -1.1 491,392 + +0.2 491,446 - -0.5 491,495 + +0.3 491,503 - -0.7 491,713 + HSERO_RS02250 0.34 +0.3 491,850 - HSERO_RS02250 0.54 +2.3 491,945 - HSERO_RS02250 0.68 -1.6 491,960 + HSERO_RS02250 0.70 -1.2 492,018 + HSERO_RS02250 0.78 -0.2 492,123 + +0.8 492,124 + +0.3 492,175 + -2.0 492,270 + +0.0 492,270 + +0.7 492,370 + -0.6 492,390 - -1.1 492,395 - +0.2 492,480 + HSERO_RS02255 0.14 +0.3 492,564 + HSERO_RS02255 0.25 +0.7 492,855 - HSERO_RS02255 0.64 +0.1 492,987 - HSERO_RS02255 0.82 -0.3
Or see this region's nucleotide sequence