Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02989 and CCNA_03903 are separated by 170 nucleotides CCNA_03903 and CCNA_02991 overlap by 136 nucleotides CCNA_02991 and CCNA_02992 are separated by 18 nucleotides CCNA_02992 and CCNA_02993 overlap by 1 nucleotides
CCNA_02989: CCNA_02989 - hypothetical protein, at 3,143,413 to 3,143,955
_02989
CCNA_03903: CCNA_03903 - IS4/5 transposase family protein, at 3,144,126 to 3,144,539
_03903
CCNA_02991: CCNA_02991 - transposase, at 3,144,404 to 3,144,898
_02991
CCNA_02992: CCNA_02992 - hypothetical protein, at 3,144,917 to 3,145,387
_02992
CCNA_02993: CCNA_02993 - NADH-ubiquinone oxidoreductase, at 3,145,387 to 3,146,679
_02993
Position (kb)
3144
3145
3146 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3143.918 kb on + strand at 3143.918 kb on + strand at 3143.924 kb on - strand at 3143.951 kb on - strand at 3143.957 kb on - strand at 3143.980 kb on + strand at 3143.987 kb on - strand at 3144.046 kb on + strand at 3144.046 kb on + strand at 3144.046 kb on + strand at 3144.046 kb on + strand at 3144.054 kb on - strand at 3144.054 kb on - strand at 3144.054 kb on - strand at 3144.054 kb on - strand at 3144.054 kb on - strand at 3144.054 kb on - strand at 3144.113 kb on - strand at 3144.888 kb on + strand at 3144.917 kb on + strand at 3144.927 kb on + strand at 3144.950 kb on - strand at 3145.014 kb on - strand, within CCNA_02992 at 3145.018 kb on - strand, within CCNA_02992 at 3145.028 kb on + strand, within CCNA_02992 at 3145.088 kb on - strand, within CCNA_02992 at 3145.138 kb on - strand, within CCNA_02992 at 3145.270 kb on + strand, within CCNA_02992 at 3145.270 kb on + strand, within CCNA_02992 at 3145.278 kb on - strand, within CCNA_02992 at 3145.278 kb on - strand, within CCNA_02992 at 3145.278 kb on - strand, within CCNA_02992 at 3145.322 kb on - strand, within CCNA_02992 at 3145.382 kb on - strand at 3145.395 kb on + strand at 3145.395 kb on + strand at 3145.395 kb on + strand at 3145.395 kb on + strand at 3145.403 kb on - strand at 3145.403 kb on - strand at 3145.403 kb on - strand at 3145.408 kb on - strand at 3145.450 kb on - strand at 3145.450 kb on - strand at 3145.484 kb on - strand at 3145.489 kb on - strand at 3145.519 kb on + strand, within CCNA_02993 at 3145.542 kb on - strand, within CCNA_02993 at 3145.575 kb on + strand, within CCNA_02993 at 3145.639 kb on - strand, within CCNA_02993 at 3145.726 kb on + strand, within CCNA_02993 at 3145.726 kb on + strand, within CCNA_02993 at 3145.726 kb on + strand, within CCNA_02993 at 3145.734 kb on - strand, within CCNA_02993 at 3145.781 kb on - strand, within CCNA_02993 at 3145.783 kb on + strand, within CCNA_02993 at 3145.793 kb on + strand, within CCNA_02993 at 3145.827 kb on - strand, within CCNA_02993 at 3145.924 kb on - strand, within CCNA_02993 at 3145.929 kb on - strand, within CCNA_02993 at 3145.951 kb on - strand, within CCNA_02993 at 3145.951 kb on - strand, within CCNA_02993 at 3146.022 kb on + strand, within CCNA_02993 at 3146.029 kb on + strand, within CCNA_02993 at 3146.079 kb on - strand, within CCNA_02993 at 3146.154 kb on - strand, within CCNA_02993 at 3146.154 kb on - strand, within CCNA_02993 at 3146.154 kb on - strand, within CCNA_02993 at 3146.184 kb on + strand, within CCNA_02993 at 3146.192 kb on - strand, within CCNA_02993 at 3146.192 kb on - strand, within CCNA_02993 at 3146.197 kb on + strand, within CCNA_02993 at 3146.197 kb on + strand, within CCNA_02993 at 3146.197 kb on - strand, within CCNA_02993 at 3146.250 kb on + strand, within CCNA_02993 at 3146.255 kb on + strand, within CCNA_02993 at 3146.255 kb on + strand, within CCNA_02993 at 3146.255 kb on + strand, within CCNA_02993 at 3146.255 kb on + strand, within CCNA_02993 at 3146.258 kb on - strand, within CCNA_02993 at 3146.258 kb on - strand, within CCNA_02993 at 3146.260 kb on + strand, within CCNA_02993 at 3146.263 kb on - strand, within CCNA_02993 at 3146.263 kb on - strand, within CCNA_02993 at 3146.263 kb on - strand, within CCNA_02993 at 3146.268 kb on - strand, within CCNA_02993 at 3146.268 kb on - strand, within CCNA_02993 at 3146.311 kb on + strand, within CCNA_02993 at 3146.311 kb on + strand, within CCNA_02993 at 3146.362 kb on - strand, within CCNA_02993 at 3146.380 kb on - strand, within CCNA_02993 at 3146.386 kb on + strand, within CCNA_02993
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 3,143,918 + +1.2 3,143,918 + -0.6 3,143,924 - +0.2 3,143,951 - -0.8 3,143,957 - -0.2 3,143,980 + -0.9 3,143,987 - +2.8 3,144,046 + +0.6 3,144,046 + +0.5 3,144,046 + -0.1 3,144,046 + +0.1 3,144,054 - -0.9 3,144,054 - -1.1 3,144,054 - +0.3 3,144,054 - -0.9 3,144,054 - +1.0 3,144,054 - -1.6 3,144,113 - -0.2 3,144,888 + -2.7 3,144,917 + -1.7 3,144,927 + +0.1 3,144,950 - +0.6 3,145,014 - CCNA_02992 0.21 +1.6 3,145,018 - CCNA_02992 0.21 +0.6 3,145,028 + CCNA_02992 0.24 +0.9 3,145,088 - CCNA_02992 0.36 +1.3 3,145,138 - CCNA_02992 0.47 -0.0 3,145,270 + CCNA_02992 0.75 -0.8 3,145,270 + CCNA_02992 0.75 +1.3 3,145,278 - CCNA_02992 0.77 +0.8 3,145,278 - CCNA_02992 0.77 -0.2 3,145,278 - CCNA_02992 0.77 +0.2 3,145,322 - CCNA_02992 0.86 -0.2 3,145,382 - +0.6 3,145,395 + -0.7 3,145,395 + -1.7 3,145,395 + +0.8 3,145,395 + -1.4 3,145,403 - +1.2 3,145,403 - +0.8 3,145,403 - +0.2 3,145,408 - +0.3 3,145,450 - +0.2 3,145,450 - +2.0 3,145,484 - +0.1 3,145,489 - +0.1 3,145,519 + CCNA_02993 0.10 +1.7 3,145,542 - CCNA_02993 0.12 +1.0 3,145,575 + CCNA_02993 0.15 +1.0 3,145,639 - CCNA_02993 0.19 +1.6 3,145,726 + CCNA_02993 0.26 +1.1 3,145,726 + CCNA_02993 0.26 -0.6 3,145,726 + CCNA_02993 0.26 +0.4 3,145,734 - CCNA_02993 0.27 -0.4 3,145,781 - CCNA_02993 0.30 +0.5 3,145,783 + CCNA_02993 0.31 -0.3 3,145,793 + CCNA_02993 0.31 -0.9 3,145,827 - CCNA_02993 0.34 -0.3 3,145,924 - CCNA_02993 0.42 +0.2 3,145,929 - CCNA_02993 0.42 +0.5 3,145,951 - CCNA_02993 0.44 +1.4 3,145,951 - CCNA_02993 0.44 +0.1 3,146,022 + CCNA_02993 0.49 -0.2 3,146,029 + CCNA_02993 0.50 +0.7 3,146,079 - CCNA_02993 0.54 +0.9 3,146,154 - CCNA_02993 0.59 +0.9 3,146,154 - CCNA_02993 0.59 -0.9 3,146,154 - CCNA_02993 0.59 -0.2 3,146,184 + CCNA_02993 0.62 -0.9 3,146,192 - CCNA_02993 0.62 -0.5 3,146,192 - CCNA_02993 0.62 +0.2 3,146,197 + CCNA_02993 0.63 -0.3 3,146,197 + CCNA_02993 0.63 +0.3 3,146,197 - CCNA_02993 0.63 +1.1 3,146,250 + CCNA_02993 0.67 -0.2 3,146,255 + CCNA_02993 0.67 +0.2 3,146,255 + CCNA_02993 0.67 -0.6 3,146,255 + CCNA_02993 0.67 -0.1 3,146,255 + CCNA_02993 0.67 -1.1 3,146,258 - CCNA_02993 0.67 +0.0 3,146,258 - CCNA_02993 0.67 +0.5 3,146,260 + CCNA_02993 0.68 +0.2 3,146,263 - CCNA_02993 0.68 +0.7 3,146,263 - CCNA_02993 0.68 -0.0 3,146,263 - CCNA_02993 0.68 -0.2 3,146,268 - CCNA_02993 0.68 -0.1 3,146,268 - CCNA_02993 0.68 -0.1 3,146,311 + CCNA_02993 0.71 +0.2 3,146,311 + CCNA_02993 0.71 -0.4 3,146,362 - CCNA_02993 0.75 +0.6 3,146,380 - CCNA_02993 0.77 +0.3 3,146,386 + CCNA_02993 0.77 +0.6
Or see this region's nucleotide sequence