Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02992

Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02989 and CCNA_03903 are separated by 170 nucleotidesCCNA_03903 and CCNA_02991 overlap by 136 nucleotidesCCNA_02991 and CCNA_02992 are separated by 18 nucleotidesCCNA_02992 and CCNA_02993 overlap by 1 nucleotides CCNA_02989: CCNA_02989 - hypothetical protein, at 3,143,413 to 3,143,955 _02989 CCNA_03903: CCNA_03903 - IS4/5 transposase family protein, at 3,144,126 to 3,144,539 _03903 CCNA_02991: CCNA_02991 - transposase, at 3,144,404 to 3,144,898 _02991 CCNA_02992: CCNA_02992 - hypothetical protein, at 3,144,917 to 3,145,387 _02992 CCNA_02993: CCNA_02993 - NADH-ubiquinone oxidoreductase, at 3,145,387 to 3,146,679 _02993 Position (kb) 3144 3145 3146Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3143.918 kb on + strandat 3143.918 kb on + strandat 3143.924 kb on - strandat 3143.951 kb on - strandat 3143.957 kb on - strandat 3143.980 kb on + strandat 3143.987 kb on - strandat 3144.046 kb on + strandat 3144.046 kb on + strandat 3144.046 kb on + strandat 3144.046 kb on + strandat 3144.054 kb on - strandat 3144.054 kb on - strandat 3144.054 kb on - strandat 3144.054 kb on - strandat 3144.054 kb on - strandat 3144.054 kb on - strandat 3144.113 kb on - strandat 3144.888 kb on + strandat 3144.917 kb on + strandat 3144.927 kb on + strandat 3144.950 kb on - strandat 3145.014 kb on - strand, within CCNA_02992at 3145.018 kb on - strand, within CCNA_02992at 3145.028 kb on + strand, within CCNA_02992at 3145.088 kb on - strand, within CCNA_02992at 3145.138 kb on - strand, within CCNA_02992at 3145.270 kb on + strand, within CCNA_02992at 3145.270 kb on + strand, within CCNA_02992at 3145.278 kb on - strand, within CCNA_02992at 3145.278 kb on - strand, within CCNA_02992at 3145.278 kb on - strand, within CCNA_02992at 3145.322 kb on - strand, within CCNA_02992at 3145.382 kb on - strandat 3145.395 kb on + strandat 3145.395 kb on + strandat 3145.395 kb on + strandat 3145.395 kb on + strandat 3145.403 kb on - strandat 3145.403 kb on - strandat 3145.403 kb on - strandat 3145.408 kb on - strandat 3145.450 kb on - strandat 3145.450 kb on - strandat 3145.484 kb on - strandat 3145.489 kb on - strandat 3145.519 kb on + strand, within CCNA_02993at 3145.542 kb on - strand, within CCNA_02993at 3145.575 kb on + strand, within CCNA_02993at 3145.639 kb on - strand, within CCNA_02993at 3145.726 kb on + strand, within CCNA_02993at 3145.726 kb on + strand, within CCNA_02993at 3145.726 kb on + strand, within CCNA_02993at 3145.734 kb on - strand, within CCNA_02993at 3145.781 kb on - strand, within CCNA_02993at 3145.783 kb on + strand, within CCNA_02993at 3145.793 kb on + strand, within CCNA_02993at 3145.827 kb on - strand, within CCNA_02993at 3145.924 kb on - strand, within CCNA_02993at 3145.929 kb on - strand, within CCNA_02993at 3145.951 kb on - strand, within CCNA_02993at 3145.951 kb on - strand, within CCNA_02993at 3146.022 kb on + strand, within CCNA_02993at 3146.029 kb on + strand, within CCNA_02993at 3146.079 kb on - strand, within CCNA_02993at 3146.154 kb on - strand, within CCNA_02993at 3146.154 kb on - strand, within CCNA_02993at 3146.154 kb on - strand, within CCNA_02993at 3146.184 kb on + strand, within CCNA_02993at 3146.192 kb on - strand, within CCNA_02993at 3146.192 kb on - strand, within CCNA_02993at 3146.197 kb on + strand, within CCNA_02993at 3146.197 kb on + strand, within CCNA_02993at 3146.197 kb on - strand, within CCNA_02993at 3146.250 kb on + strand, within CCNA_02993at 3146.255 kb on + strand, within CCNA_02993at 3146.255 kb on + strand, within CCNA_02993at 3146.255 kb on + strand, within CCNA_02993at 3146.255 kb on + strand, within CCNA_02993at 3146.258 kb on - strand, within CCNA_02993at 3146.258 kb on - strand, within CCNA_02993at 3146.260 kb on + strand, within CCNA_02993at 3146.263 kb on - strand, within CCNA_02993at 3146.263 kb on - strand, within CCNA_02993at 3146.263 kb on - strand, within CCNA_02993at 3146.268 kb on - strand, within CCNA_02993at 3146.268 kb on - strand, within CCNA_02993at 3146.311 kb on + strand, within CCNA_02993at 3146.311 kb on + strand, within CCNA_02993at 3146.362 kb on - strand, within CCNA_02993at 3146.380 kb on - strand, within CCNA_02993at 3146.386 kb on + strand, within CCNA_02993

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Per-strain Table

Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
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3,143,918 + +1.2
3,143,918 + -0.6
3,143,924 - +0.2
3,143,951 - -0.8
3,143,957 - -0.2
3,143,980 + -0.9
3,143,987 - +2.8
3,144,046 + +0.6
3,144,046 + +0.5
3,144,046 + -0.1
3,144,046 + +0.1
3,144,054 - -0.9
3,144,054 - -1.1
3,144,054 - +0.3
3,144,054 - -0.9
3,144,054 - +1.0
3,144,054 - -1.6
3,144,113 - -0.2
3,144,888 + -2.7
3,144,917 + -1.7
3,144,927 + +0.1
3,144,950 - +0.6
3,145,014 - CCNA_02992 0.21 +1.6
3,145,018 - CCNA_02992 0.21 +0.6
3,145,028 + CCNA_02992 0.24 +0.9
3,145,088 - CCNA_02992 0.36 +1.3
3,145,138 - CCNA_02992 0.47 -0.0
3,145,270 + CCNA_02992 0.75 -0.8
3,145,270 + CCNA_02992 0.75 +1.3
3,145,278 - CCNA_02992 0.77 +0.8
3,145,278 - CCNA_02992 0.77 -0.2
3,145,278 - CCNA_02992 0.77 +0.2
3,145,322 - CCNA_02992 0.86 -0.2
3,145,382 - +0.6
3,145,395 + -0.7
3,145,395 + -1.7
3,145,395 + +0.8
3,145,395 + -1.4
3,145,403 - +1.2
3,145,403 - +0.8
3,145,403 - +0.2
3,145,408 - +0.3
3,145,450 - +0.2
3,145,450 - +2.0
3,145,484 - +0.1
3,145,489 - +0.1
3,145,519 + CCNA_02993 0.10 +1.7
3,145,542 - CCNA_02993 0.12 +1.0
3,145,575 + CCNA_02993 0.15 +1.0
3,145,639 - CCNA_02993 0.19 +1.6
3,145,726 + CCNA_02993 0.26 +1.1
3,145,726 + CCNA_02993 0.26 -0.6
3,145,726 + CCNA_02993 0.26 +0.4
3,145,734 - CCNA_02993 0.27 -0.4
3,145,781 - CCNA_02993 0.30 +0.5
3,145,783 + CCNA_02993 0.31 -0.3
3,145,793 + CCNA_02993 0.31 -0.9
3,145,827 - CCNA_02993 0.34 -0.3
3,145,924 - CCNA_02993 0.42 +0.2
3,145,929 - CCNA_02993 0.42 +0.5
3,145,951 - CCNA_02993 0.44 +1.4
3,145,951 - CCNA_02993 0.44 +0.1
3,146,022 + CCNA_02993 0.49 -0.2
3,146,029 + CCNA_02993 0.50 +0.7
3,146,079 - CCNA_02993 0.54 +0.9
3,146,154 - CCNA_02993 0.59 +0.9
3,146,154 - CCNA_02993 0.59 -0.9
3,146,154 - CCNA_02993 0.59 -0.2
3,146,184 + CCNA_02993 0.62 -0.9
3,146,192 - CCNA_02993 0.62 -0.5
3,146,192 - CCNA_02993 0.62 +0.2
3,146,197 + CCNA_02993 0.63 -0.3
3,146,197 + CCNA_02993 0.63 +0.3
3,146,197 - CCNA_02993 0.63 +1.1
3,146,250 + CCNA_02993 0.67 -0.2
3,146,255 + CCNA_02993 0.67 +0.2
3,146,255 + CCNA_02993 0.67 -0.6
3,146,255 + CCNA_02993 0.67 -0.1
3,146,255 + CCNA_02993 0.67 -1.1
3,146,258 - CCNA_02993 0.67 +0.0
3,146,258 - CCNA_02993 0.67 +0.5
3,146,260 + CCNA_02993 0.68 +0.2
3,146,263 - CCNA_02993 0.68 +0.7
3,146,263 - CCNA_02993 0.68 -0.0
3,146,263 - CCNA_02993 0.68 -0.2
3,146,268 - CCNA_02993 0.68 -0.1
3,146,268 - CCNA_02993 0.68 -0.1
3,146,311 + CCNA_02993 0.71 +0.2
3,146,311 + CCNA_02993 0.71 -0.4
3,146,362 - CCNA_02993 0.75 +0.6
3,146,380 - CCNA_02993 0.77 +0.3
3,146,386 + CCNA_02993 0.77 +0.6

Or see this region's nucleotide sequence