Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02298 and CCNA_02299 are separated by 58 nucleotides CCNA_02299 and CCNA_02300 overlap by 4 nucleotides CCNA_02300 and CCNA_02301 overlap by 4 nucleotides
CCNA_02297: CCNA_02297 - hypoxanthine-guanine phosphoribosyltransferase, at 2,444,280 to 2,444,861
_02297
CCNA_02298: CCNA_02298 - MJ0042 family finger-like domain protein, at 2,444,803 to 2,445,762
_02298
CCNA_02299: CCNA_02299 - cell division ATP-binding protein FtsE, at 2,445,821 to 2,446,528
_02299
CCNA_02300: CCNA_02300 - cell division protein FtsX, at 2,446,525 to 2,447,418
_02300
CCNA_02301: CCNA_02301 - YdcF-like family protein, at 2,447,415 to 2,448,032
_02301
Position (kb)
2445
2446
2447 Strain fitness (log2 ratio)
-2
-1
0
1 at 2444.837 kb on - strand at 2444.865 kb on - strand at 2444.871 kb on + strand at 2444.895 kb on + strand at 2444.954 kb on + strand, within CCNA_02298 at 2444.971 kb on + strand, within CCNA_02298 at 2445.119 kb on - strand, within CCNA_02298 at 2445.132 kb on - strand, within CCNA_02298 at 2445.147 kb on - strand, within CCNA_02298 at 2445.178 kb on - strand, within CCNA_02298 at 2445.195 kb on - strand, within CCNA_02298 at 2445.195 kb on - strand, within CCNA_02298 at 2445.200 kb on - strand, within CCNA_02298 at 2445.226 kb on + strand, within CCNA_02298 at 2445.238 kb on + strand, within CCNA_02298 at 2445.245 kb on + strand, within CCNA_02298 at 2445.245 kb on + strand, within CCNA_02298 at 2445.246 kb on - strand, within CCNA_02298 at 2445.273 kb on + strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.339 kb on + strand, within CCNA_02298 at 2445.355 kb on + strand, within CCNA_02298 at 2445.363 kb on - strand, within CCNA_02298 at 2445.408 kb on - strand, within CCNA_02298 at 2445.508 kb on + strand, within CCNA_02298 at 2445.595 kb on - strand, within CCNA_02298 at 2445.607 kb on + strand, within CCNA_02298 at 2445.614 kb on - strand, within CCNA_02298 at 2445.615 kb on - strand, within CCNA_02298 at 2445.691 kb on - strand at 2445.717 kb on + strand at 2445.735 kb on - strand at 2445.831 kb on + strand at 2445.836 kb on + strand at 2445.841 kb on + strand at 2445.844 kb on - strand at 2445.844 kb on - strand at 2445.868 kb on + strand at 2445.991 kb on + strand, within CCNA_02299 at 2446.042 kb on + strand, within CCNA_02299 at 2446.047 kb on + strand, within CCNA_02299 at 2446.071 kb on + strand, within CCNA_02299 at 2446.165 kb on + strand, within CCNA_02299 at 2446.220 kb on + strand, within CCNA_02299 at 2446.220 kb on + strand, within CCNA_02299 at 2446.220 kb on + strand, within CCNA_02299 at 2446.220 kb on + strand, within CCNA_02299 at 2446.313 kb on + strand, within CCNA_02299 at 2446.406 kb on - strand, within CCNA_02299 at 2446.422 kb on + strand, within CCNA_02299 at 2446.422 kb on + strand, within CCNA_02299 at 2446.461 kb on - strand at 2446.511 kb on - strand at 2446.688 kb on - strand, within CCNA_02300 at 2446.864 kb on + strand, within CCNA_02300 at 2447.140 kb on + strand, within CCNA_02300 at 2447.174 kb on + strand, within CCNA_02300 at 2447.318 kb on - strand, within CCNA_02300 at 2447.415 kb on + strand at 2447.457 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 2,444,837 - -0.3 2,444,865 - -0.1 2,444,871 + +0.9 2,444,895 + +0.5 2,444,954 + CCNA_02298 0.16 +0.2 2,444,971 + CCNA_02298 0.17 -0.3 2,445,119 - CCNA_02298 0.33 +0.7 2,445,132 - CCNA_02298 0.34 +0.8 2,445,147 - CCNA_02298 0.36 +0.2 2,445,178 - CCNA_02298 0.39 +0.1 2,445,195 - CCNA_02298 0.41 +0.5 2,445,195 - CCNA_02298 0.41 +0.7 2,445,200 - CCNA_02298 0.41 +1.2 2,445,226 + CCNA_02298 0.44 +0.2 2,445,238 + CCNA_02298 0.45 -0.9 2,445,245 + CCNA_02298 0.46 -0.6 2,445,245 + CCNA_02298 0.46 -0.7 2,445,246 - CCNA_02298 0.46 -0.4 2,445,273 + CCNA_02298 0.49 +0.5 2,445,281 - CCNA_02298 0.50 +0.0 2,445,281 - CCNA_02298 0.50 +0.5 2,445,281 - CCNA_02298 0.50 +0.3 2,445,281 - CCNA_02298 0.50 +0.5 2,445,281 - CCNA_02298 0.50 -0.1 2,445,339 + CCNA_02298 0.56 -0.3 2,445,355 + CCNA_02298 0.57 +0.5 2,445,363 - CCNA_02298 0.58 +0.8 2,445,408 - CCNA_02298 0.63 +0.5 2,445,508 + CCNA_02298 0.73 -1.2 2,445,595 - CCNA_02298 0.82 +0.1 2,445,607 + CCNA_02298 0.84 +0.9 2,445,614 - CCNA_02298 0.84 +0.5 2,445,615 - CCNA_02298 0.85 +0.8 2,445,691 - -0.1 2,445,717 + +1.1 2,445,735 - -0.7 2,445,831 + -1.2 2,445,836 + +0.9 2,445,841 + -0.6 2,445,844 - -1.2 2,445,844 - -0.2 2,445,868 + +0.9 2,445,991 + CCNA_02299 0.24 -0.7 2,446,042 + CCNA_02299 0.31 -0.1 2,446,047 + CCNA_02299 0.32 -1.9 2,446,071 + CCNA_02299 0.35 -1.2 2,446,165 + CCNA_02299 0.49 +0.0 2,446,220 + CCNA_02299 0.56 -0.5 2,446,220 + CCNA_02299 0.56 -1.2 2,446,220 + CCNA_02299 0.56 -1.7 2,446,220 + CCNA_02299 0.56 -1.1 2,446,313 + CCNA_02299 0.69 +0.5 2,446,406 - CCNA_02299 0.83 -0.1 2,446,422 + CCNA_02299 0.85 -1.1 2,446,422 + CCNA_02299 0.85 -1.9 2,446,461 - -0.5 2,446,511 - -0.0 2,446,688 - CCNA_02300 0.18 -1.2 2,446,864 + CCNA_02300 0.38 -0.5 2,447,140 + CCNA_02300 0.69 -0.7 2,447,174 + CCNA_02300 0.73 -1.5 2,447,318 - CCNA_02300 0.89 -1.2 2,447,415 + -0.2 2,447,457 + -0.5
Or see this region's nucleotide sequence