Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00065 and CCNA_00066 are separated by 57 nucleotides CCNA_00066 and CCNA_00067 are separated by 4 nucleotides CCNA_00067 and CCNA_00068 are separated by 19 nucleotides
CCNA_00065: CCNA_00065 - S-adenosylmethionine-dependent methyltransferase, at 68,289 to 69,062
_00065
CCNA_00066: CCNA_00066 - Rieske (2Fe-2S) domain protein, at 69,120 to 69,488
_00066
CCNA_00067: CCNA_00067 - YciI-like protein, at 69,493 to 69,774
_00067
CCNA_00068: CCNA_00068 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 69,794 to 70,804
_00068
Position (kb)
69
70 Strain fitness (log2 ratio)
-1
0
1
2 at 68.507 kb on + strand, within CCNA_00065 at 68.517 kb on - strand, within CCNA_00065 at 68.524 kb on + strand, within CCNA_00065 at 68.524 kb on + strand, within CCNA_00065 at 68.524 kb on + strand, within CCNA_00065 at 68.532 kb on - strand, within CCNA_00065 at 68.532 kb on - strand, within CCNA_00065 at 68.532 kb on - strand, within CCNA_00065 at 68.537 kb on - strand, within CCNA_00065 at 68.595 kb on + strand, within CCNA_00065 at 68.596 kb on + strand, within CCNA_00065 at 68.759 kb on + strand, within CCNA_00065 at 68.764 kb on - strand, within CCNA_00065 at 68.885 kb on - strand, within CCNA_00065 at 68.885 kb on - strand, within CCNA_00065 at 68.911 kb on + strand, within CCNA_00065 at 68.911 kb on + strand, within CCNA_00065 at 68.918 kb on - strand, within CCNA_00065 at 68.945 kb on + strand, within CCNA_00065 at 68.945 kb on + strand, within CCNA_00065 at 68.948 kb on - strand, within CCNA_00065 at 68.950 kb on + strand, within CCNA_00065 at 68.950 kb on + strand, within CCNA_00065 at 68.958 kb on - strand, within CCNA_00065 at 68.958 kb on - strand, within CCNA_00065 at 68.958 kb on - strand, within CCNA_00065 at 68.958 kb on - strand, within CCNA_00065 at 68.983 kb on + strand, within CCNA_00065 at 68.991 kb on - strand at 68.991 kb on - strand at 68.991 kb on - strand at 69.001 kb on + strand at 69.002 kb on + strand at 69.010 kb on - strand at 69.023 kb on + strand at 69.045 kb on - strand at 69.045 kb on - strand at 69.047 kb on + strand at 69.093 kb on + strand at 69.114 kb on - strand at 69.117 kb on + strand at 69.118 kb on + strand at 69.135 kb on - strand at 69.187 kb on - strand, within CCNA_00066 at 69.188 kb on - strand, within CCNA_00066 at 69.194 kb on + strand, within CCNA_00066 at 69.230 kb on - strand, within CCNA_00066 at 69.241 kb on + strand, within CCNA_00066 at 69.254 kb on + strand, within CCNA_00066 at 69.326 kb on - strand, within CCNA_00066 at 69.326 kb on - strand, within CCNA_00066 at 69.326 kb on - strand, within CCNA_00066 at 69.326 kb on - strand, within CCNA_00066 at 69.409 kb on - strand, within CCNA_00066 at 69.411 kb on + strand, within CCNA_00066 at 69.447 kb on + strand, within CCNA_00066 at 69.466 kb on + strand at 69.474 kb on - strand at 69.490 kb on + strand at 69.491 kb on + strand at 69.499 kb on - strand at 69.499 kb on - strand at 69.499 kb on - strand at 69.499 kb on - strand at 69.499 kb on - strand at 69.522 kb on + strand, within CCNA_00067 at 69.554 kb on + strand, within CCNA_00067 at 69.554 kb on - strand, within CCNA_00067 at 69.554 kb on - strand, within CCNA_00067 at 69.554 kb on - strand, within CCNA_00067 at 69.579 kb on + strand, within CCNA_00067 at 69.588 kb on - strand, within CCNA_00067 at 69.588 kb on - strand, within CCNA_00067 at 69.636 kb on - strand, within CCNA_00067 at 69.646 kb on + strand, within CCNA_00067 at 69.652 kb on - strand, within CCNA_00067 at 69.656 kb on + strand, within CCNA_00067 at 69.674 kb on - strand, within CCNA_00067 at 69.675 kb on - strand, within CCNA_00067 at 69.675 kb on - strand, within CCNA_00067 at 69.754 kb on - strand at 69.754 kb on - strand at 69.776 kb on - strand at 69.782 kb on + strand at 69.790 kb on - strand at 69.790 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 68,507 + CCNA_00065 0.28 -1.4 68,517 - CCNA_00065 0.29 +0.2 68,524 + CCNA_00065 0.30 +2.4 68,524 + CCNA_00065 0.30 +0.6 68,524 + CCNA_00065 0.30 -1.3 68,532 - CCNA_00065 0.31 +0.7 68,532 - CCNA_00065 0.31 +0.5 68,532 - CCNA_00065 0.31 +0.0 68,537 - CCNA_00065 0.32 -0.1 68,595 + CCNA_00065 0.40 -0.3 68,596 + CCNA_00065 0.40 +0.5 68,759 + CCNA_00065 0.61 -0.1 68,764 - CCNA_00065 0.61 +0.9 68,885 - CCNA_00065 0.77 +0.2 68,885 - CCNA_00065 0.77 +1.5 68,911 + CCNA_00065 0.80 +0.1 68,911 + CCNA_00065 0.80 +0.7 68,918 - CCNA_00065 0.81 -0.0 68,945 + CCNA_00065 0.85 +1.0 68,945 + CCNA_00065 0.85 -0.4 68,948 - CCNA_00065 0.85 +0.7 68,950 + CCNA_00065 0.85 +1.2 68,950 + CCNA_00065 0.85 +0.2 68,958 - CCNA_00065 0.86 -0.2 68,958 - CCNA_00065 0.86 -0.1 68,958 - CCNA_00065 0.86 -0.1 68,958 - CCNA_00065 0.86 -1.0 68,983 + CCNA_00065 0.90 -0.6 68,991 - +0.6 68,991 - +0.3 68,991 - +0.7 69,001 + +0.1 69,002 + +0.6 69,010 - +0.3 69,023 + -0.1 69,045 - -0.9 69,045 - -1.0 69,047 + -0.5 69,093 + +0.0 69,114 - +0.8 69,117 + -0.3 69,118 + -1.7 69,135 - +1.1 69,187 - CCNA_00066 0.18 -0.1 69,188 - CCNA_00066 0.18 +0.6 69,194 + CCNA_00066 0.20 +0.1 69,230 - CCNA_00066 0.30 +0.5 69,241 + CCNA_00066 0.33 -0.8 69,254 + CCNA_00066 0.36 -0.5 69,326 - CCNA_00066 0.56 +0.4 69,326 - CCNA_00066 0.56 -0.2 69,326 - CCNA_00066 0.56 +0.2 69,326 - CCNA_00066 0.56 +0.7 69,409 - CCNA_00066 0.78 +0.2 69,411 + CCNA_00066 0.79 -1.2 69,447 + CCNA_00066 0.89 +0.5 69,466 + -0.6 69,474 - +0.4 69,490 + -1.1 69,491 + -0.5 69,499 - +0.2 69,499 - +0.0 69,499 - +0.5 69,499 - -0.0 69,499 - -0.6 69,522 + CCNA_00067 0.10 +0.7 69,554 + CCNA_00067 0.22 -0.5 69,554 - CCNA_00067 0.22 +0.4 69,554 - CCNA_00067 0.22 +0.7 69,554 - CCNA_00067 0.22 +0.3 69,579 + CCNA_00067 0.30 +0.7 69,588 - CCNA_00067 0.34 +0.5 69,588 - CCNA_00067 0.34 +0.3 69,636 - CCNA_00067 0.51 +0.1 69,646 + CCNA_00067 0.54 +0.0 69,652 - CCNA_00067 0.56 +0.4 69,656 + CCNA_00067 0.58 +0.9 69,674 - CCNA_00067 0.64 +0.5 69,675 - CCNA_00067 0.65 +0.0 69,675 - CCNA_00067 0.65 +0.1 69,754 - -0.6 69,754 - -0.1 69,776 - -0.5 69,782 + +0.7 69,790 - +0.5 69,790 - +0.4
Or see this region's nucleotide sequence