Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00067

Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00065 and CCNA_00066 are separated by 57 nucleotidesCCNA_00066 and CCNA_00067 are separated by 4 nucleotidesCCNA_00067 and CCNA_00068 are separated by 19 nucleotides CCNA_00065: CCNA_00065 - S-adenosylmethionine-dependent methyltransferase, at 68,289 to 69,062 _00065 CCNA_00066: CCNA_00066 - Rieske (2Fe-2S) domain protein, at 69,120 to 69,488 _00066 CCNA_00067: CCNA_00067 - YciI-like protein, at 69,493 to 69,774 _00067 CCNA_00068: CCNA_00068 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 69,794 to 70,804 _00068 Position (kb) 69 70Strain fitness (log2 ratio) -1 0 1 2at 68.507 kb on + strand, within CCNA_00065at 68.517 kb on - strand, within CCNA_00065at 68.524 kb on + strand, within CCNA_00065at 68.524 kb on + strand, within CCNA_00065at 68.524 kb on + strand, within CCNA_00065at 68.532 kb on - strand, within CCNA_00065at 68.532 kb on - strand, within CCNA_00065at 68.532 kb on - strand, within CCNA_00065at 68.537 kb on - strand, within CCNA_00065at 68.595 kb on + strand, within CCNA_00065at 68.596 kb on + strand, within CCNA_00065at 68.759 kb on + strand, within CCNA_00065at 68.764 kb on - strand, within CCNA_00065at 68.885 kb on - strand, within CCNA_00065at 68.885 kb on - strand, within CCNA_00065at 68.911 kb on + strand, within CCNA_00065at 68.911 kb on + strand, within CCNA_00065at 68.918 kb on - strand, within CCNA_00065at 68.945 kb on + strand, within CCNA_00065at 68.945 kb on + strand, within CCNA_00065at 68.948 kb on - strand, within CCNA_00065at 68.950 kb on + strand, within CCNA_00065at 68.950 kb on + strand, within CCNA_00065at 68.958 kb on - strand, within CCNA_00065at 68.958 kb on - strand, within CCNA_00065at 68.958 kb on - strand, within CCNA_00065at 68.958 kb on - strand, within CCNA_00065at 68.983 kb on + strand, within CCNA_00065at 68.991 kb on - strandat 68.991 kb on - strandat 68.991 kb on - strandat 69.001 kb on + strandat 69.002 kb on + strandat 69.010 kb on - strandat 69.023 kb on + strandat 69.045 kb on - strandat 69.045 kb on - strandat 69.047 kb on + strandat 69.093 kb on + strandat 69.114 kb on - strandat 69.117 kb on + strandat 69.118 kb on + strandat 69.135 kb on - strandat 69.187 kb on - strand, within CCNA_00066at 69.188 kb on - strand, within CCNA_00066at 69.194 kb on + strand, within CCNA_00066at 69.230 kb on - strand, within CCNA_00066at 69.241 kb on + strand, within CCNA_00066at 69.254 kb on + strand, within CCNA_00066at 69.326 kb on - strand, within CCNA_00066at 69.326 kb on - strand, within CCNA_00066at 69.326 kb on - strand, within CCNA_00066at 69.326 kb on - strand, within CCNA_00066at 69.409 kb on - strand, within CCNA_00066at 69.411 kb on + strand, within CCNA_00066at 69.447 kb on + strand, within CCNA_00066at 69.466 kb on + strandat 69.474 kb on - strandat 69.490 kb on + strandat 69.491 kb on + strandat 69.499 kb on - strandat 69.499 kb on - strandat 69.499 kb on - strandat 69.499 kb on - strandat 69.499 kb on - strandat 69.522 kb on + strand, within CCNA_00067at 69.554 kb on + strand, within CCNA_00067at 69.554 kb on - strand, within CCNA_00067at 69.554 kb on - strand, within CCNA_00067at 69.554 kb on - strand, within CCNA_00067at 69.579 kb on + strand, within CCNA_00067at 69.588 kb on - strand, within CCNA_00067at 69.588 kb on - strand, within CCNA_00067at 69.636 kb on - strand, within CCNA_00067at 69.646 kb on + strand, within CCNA_00067at 69.652 kb on - strand, within CCNA_00067at 69.656 kb on + strand, within CCNA_00067at 69.674 kb on - strand, within CCNA_00067at 69.675 kb on - strand, within CCNA_00067at 69.675 kb on - strand, within CCNA_00067at 69.754 kb on - strandat 69.754 kb on - strandat 69.776 kb on - strandat 69.782 kb on + strandat 69.790 kb on - strandat 69.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
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68,507 + CCNA_00065 0.28 -1.4
68,517 - CCNA_00065 0.29 +0.2
68,524 + CCNA_00065 0.30 +2.4
68,524 + CCNA_00065 0.30 +0.6
68,524 + CCNA_00065 0.30 -1.3
68,532 - CCNA_00065 0.31 +0.7
68,532 - CCNA_00065 0.31 +0.5
68,532 - CCNA_00065 0.31 +0.0
68,537 - CCNA_00065 0.32 -0.1
68,595 + CCNA_00065 0.40 -0.3
68,596 + CCNA_00065 0.40 +0.5
68,759 + CCNA_00065 0.61 -0.1
68,764 - CCNA_00065 0.61 +0.9
68,885 - CCNA_00065 0.77 +0.2
68,885 - CCNA_00065 0.77 +1.5
68,911 + CCNA_00065 0.80 +0.1
68,911 + CCNA_00065 0.80 +0.7
68,918 - CCNA_00065 0.81 -0.0
68,945 + CCNA_00065 0.85 +1.0
68,945 + CCNA_00065 0.85 -0.4
68,948 - CCNA_00065 0.85 +0.7
68,950 + CCNA_00065 0.85 +1.2
68,950 + CCNA_00065 0.85 +0.2
68,958 - CCNA_00065 0.86 -0.2
68,958 - CCNA_00065 0.86 -0.1
68,958 - CCNA_00065 0.86 -0.1
68,958 - CCNA_00065 0.86 -1.0
68,983 + CCNA_00065 0.90 -0.6
68,991 - +0.6
68,991 - +0.3
68,991 - +0.7
69,001 + +0.1
69,002 + +0.6
69,010 - +0.3
69,023 + -0.1
69,045 - -0.9
69,045 - -1.0
69,047 + -0.5
69,093 + +0.0
69,114 - +0.8
69,117 + -0.3
69,118 + -1.7
69,135 - +1.1
69,187 - CCNA_00066 0.18 -0.1
69,188 - CCNA_00066 0.18 +0.6
69,194 + CCNA_00066 0.20 +0.1
69,230 - CCNA_00066 0.30 +0.5
69,241 + CCNA_00066 0.33 -0.8
69,254 + CCNA_00066 0.36 -0.5
69,326 - CCNA_00066 0.56 +0.4
69,326 - CCNA_00066 0.56 -0.2
69,326 - CCNA_00066 0.56 +0.2
69,326 - CCNA_00066 0.56 +0.7
69,409 - CCNA_00066 0.78 +0.2
69,411 + CCNA_00066 0.79 -1.2
69,447 + CCNA_00066 0.89 +0.5
69,466 + -0.6
69,474 - +0.4
69,490 + -1.1
69,491 + -0.5
69,499 - +0.2
69,499 - +0.0
69,499 - +0.5
69,499 - -0.0
69,499 - -0.6
69,522 + CCNA_00067 0.10 +0.7
69,554 + CCNA_00067 0.22 -0.5
69,554 - CCNA_00067 0.22 +0.4
69,554 - CCNA_00067 0.22 +0.7
69,554 - CCNA_00067 0.22 +0.3
69,579 + CCNA_00067 0.30 +0.7
69,588 - CCNA_00067 0.34 +0.5
69,588 - CCNA_00067 0.34 +0.3
69,636 - CCNA_00067 0.51 +0.1
69,646 + CCNA_00067 0.54 +0.0
69,652 - CCNA_00067 0.56 +0.4
69,656 + CCNA_00067 0.58 +0.9
69,674 - CCNA_00067 0.64 +0.5
69,675 - CCNA_00067 0.65 +0.0
69,675 - CCNA_00067 0.65 +0.1
69,754 - -0.6
69,754 - -0.1
69,776 - -0.5
69,782 + +0.7
69,790 - +0.5
69,790 - +0.4

Or see this region's nucleotide sequence