Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00046

Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00044 and CCNA_00045 are separated by 258 nucleotidesCCNA_00045 and CCNA_00046 are separated by 6 nucleotidesCCNA_00046 and CCNA_00047 are separated by 100 nucleotidesCCNA_00047 and CCNA_00048 are separated by 89 nucleotides CCNA_00044: CCNA_00044 - ribosome maturation protein RimP, at 48,271 to 48,846 _00044 CCNA_00045: CCNA_00045 - inorganic pyrophosphatase, at 49,105 to 49,638 _00045 CCNA_00046: CCNA_00046 - hypothetical protein, at 49,645 to 50,031 _00046 CCNA_00047: CCNA_00047 - tRNA m7-G46 methyltransferase, at 50,132 to 50,812 _00047 CCNA_00048: CCNA_00048 - S-adenosylmethionine synthetase, at 50,902 to 52,125 _00048 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1 2 3at 48.662 kb on - strand, within CCNA_00044at 49.019 kb on - strandat 49.039 kb on + strandat 49.648 kb on + strandat 49.648 kb on + strandat 49.656 kb on - strandat 49.673 kb on + strandat 49.681 kb on - strandat 49.681 kb on - strandat 49.681 kb on - strandat 49.726 kb on + strand, within CCNA_00046at 49.727 kb on - strand, within CCNA_00046at 49.736 kb on - strand, within CCNA_00046at 49.816 kb on - strand, within CCNA_00046at 49.837 kb on + strand, within CCNA_00046at 49.837 kb on + strand, within CCNA_00046at 49.840 kb on - strand, within CCNA_00046at 49.845 kb on - strand, within CCNA_00046at 49.845 kb on - strand, within CCNA_00046at 49.850 kb on - strand, within CCNA_00046at 49.876 kb on + strand, within CCNA_00046at 49.879 kb on - strand, within CCNA_00046at 49.914 kb on - strand, within CCNA_00046at 49.914 kb on - strand, within CCNA_00046at 49.914 kb on - strand, within CCNA_00046at 49.945 kb on - strand, within CCNA_00046at 49.958 kb on + strand, within CCNA_00046at 49.961 kb on - strand, within CCNA_00046at 49.961 kb on - strand, within CCNA_00046at 49.983 kb on - strand, within CCNA_00046at 49.990 kb on + strand, within CCNA_00046at 49.998 kb on - strandat 50.004 kb on - strandat 50.006 kb on + strandat 50.034 kb on - strandat 50.034 kb on - strandat 50.071 kb on + strandat 50.078 kb on + strandat 50.078 kb on + strandat 50.078 kb on + strandat 50.078 kb on + strandat 50.078 kb on + strandat 50.078 kb on + strandat 50.086 kb on - strandat 50.086 kb on - strandat 50.086 kb on - strandat 50.086 kb on - strandat 50.086 kb on - strandat 50.123 kb on - strandat 50.124 kb on - strandat 50.264 kb on + strand, within CCNA_00047at 50.272 kb on - strand, within CCNA_00047at 50.288 kb on - strand, within CCNA_00047at 50.288 kb on - strand, within CCNA_00047at 50.288 kb on - strand, within CCNA_00047at 50.290 kb on - strand, within CCNA_00047at 50.318 kb on + strand, within CCNA_00047at 50.326 kb on - strand, within CCNA_00047at 50.326 kb on - strand, within CCNA_00047at 50.335 kb on + strand, within CCNA_00047at 50.535 kb on + strand, within CCNA_00047at 50.539 kb on + strand, within CCNA_00047at 50.558 kb on + strand, within CCNA_00047at 50.605 kb on - strand, within CCNA_00047at 50.620 kb on - strand, within CCNA_00047at 50.634 kb on + strand, within CCNA_00047at 50.649 kb on + strand, within CCNA_00047at 50.649 kb on + strand, within CCNA_00047at 50.649 kb on + strand, within CCNA_00047at 50.657 kb on - strand, within CCNA_00047at 50.657 kb on - strand, within CCNA_00047at 50.657 kb on - strand, within CCNA_00047at 50.661 kb on + strand, within CCNA_00047at 50.663 kb on - strand, within CCNA_00047at 50.676 kb on - strand, within CCNA_00047at 50.690 kb on + strand, within CCNA_00047at 50.698 kb on - strand, within CCNA_00047at 50.723 kb on + strand, within CCNA_00047at 50.723 kb on + strand, within CCNA_00047at 50.765 kb on - strandat 50.767 kb on + strandat 50.816 kb on - strandat 50.821 kb on + strandat 50.875 kb on - strandat 50.899 kb on + strandat 50.900 kb on + strandat 50.908 kb on - strandat 50.908 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
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48,662 - CCNA_00044 0.68 -1.2
49,019 - -0.3
49,039 + -1.3
49,648 + +0.6
49,648 + +0.6
49,656 - -0.3
49,673 + -0.0
49,681 - +0.0
49,681 - +0.7
49,681 - +0.7
49,726 + CCNA_00046 0.21 +0.4
49,727 - CCNA_00046 0.21 -0.8
49,736 - CCNA_00046 0.24 -0.2
49,816 - CCNA_00046 0.44 +1.4
49,837 + CCNA_00046 0.50 -0.3
49,837 + CCNA_00046 0.50 +0.7
49,840 - CCNA_00046 0.50 +0.5
49,845 - CCNA_00046 0.52 +0.4
49,845 - CCNA_00046 0.52 +0.2
49,850 - CCNA_00046 0.53 -1.5
49,876 + CCNA_00046 0.60 +0.9
49,879 - CCNA_00046 0.60 -0.5
49,914 - CCNA_00046 0.70 -0.4
49,914 - CCNA_00046 0.70 +0.3
49,914 - CCNA_00046 0.70 +1.1
49,945 - CCNA_00046 0.78 +0.4
49,958 + CCNA_00046 0.81 +0.8
49,961 - CCNA_00046 0.82 +0.1
49,961 - CCNA_00046 0.82 +1.5
49,983 - CCNA_00046 0.87 +0.5
49,990 + CCNA_00046 0.89 +0.0
49,998 - +0.6
50,004 - +0.7
50,006 + +0.4
50,034 - +0.3
50,034 - -0.2
50,071 + -0.0
50,078 + +1.9
50,078 + +0.8
50,078 + +0.4
50,078 + +1.3
50,078 + +2.5
50,078 + +0.4
50,086 - +0.3
50,086 - +0.2
50,086 - +0.1
50,086 - +0.1
50,086 - +0.8
50,123 - -0.4
50,124 - +2.5
50,264 + CCNA_00047 0.19 -1.0
50,272 - CCNA_00047 0.21 +0.4
50,288 - CCNA_00047 0.23 +1.2
50,288 - CCNA_00047 0.23 -0.6
50,288 - CCNA_00047 0.23 +0.0
50,290 - CCNA_00047 0.23 +0.2
50,318 + CCNA_00047 0.27 +0.6
50,326 - CCNA_00047 0.28 +0.7
50,326 - CCNA_00047 0.28 +0.4
50,335 + CCNA_00047 0.30 +0.5
50,535 + CCNA_00047 0.59 -0.0
50,539 + CCNA_00047 0.60 +0.2
50,558 + CCNA_00047 0.63 -0.7
50,605 - CCNA_00047 0.69 +0.4
50,620 - CCNA_00047 0.72 +0.9
50,634 + CCNA_00047 0.74 +0.5
50,649 + CCNA_00047 0.76 +3.0
50,649 + CCNA_00047 0.76 +0.4
50,649 + CCNA_00047 0.76 +0.3
50,657 - CCNA_00047 0.77 +0.3
50,657 - CCNA_00047 0.77 +0.9
50,657 - CCNA_00047 0.77 +0.8
50,661 + CCNA_00047 0.78 +0.3
50,663 - CCNA_00047 0.78 +0.4
50,676 - CCNA_00047 0.80 +0.6
50,690 + CCNA_00047 0.82 +0.5
50,698 - CCNA_00047 0.83 +0.8
50,723 + CCNA_00047 0.87 +0.5
50,723 + CCNA_00047 0.87 +0.5
50,765 - +0.5
50,767 + +0.5
50,816 - +0.4
50,821 + -0.2
50,875 - +0.4
50,899 + +1.4
50,900 + -0.9
50,908 - +0.5
50,908 - +0.2

Or see this region's nucleotide sequence