Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26865 and BWI76_RS26870 overlap by 4 nucleotides BWI76_RS26870 and BWI76_RS26875 are separated by 10 nucleotides BWI76_RS26875 and BWI76_RS26880 are separated by 9 nucleotides
BWI76_RS26865: BWI76_RS26865 - dipeptide ABC transporter ATP-binding protein, at 5,573,511 to 5,574,524
_RS26865
BWI76_RS26870: BWI76_RS26870 - dipeptide ABC transporter ATP-binding protein, at 5,574,521 to 5,575,504
_RS26870
BWI76_RS26875: BWI76_RS26875 - dipeptide ABC transporter permease DppC, at 5,575,515 to 5,576,417
_RS26875
BWI76_RS26880: BWI76_RS26880 - dipeptide ABC transporter permease DppB, at 5,576,427 to 5,577,446
_RS26880
Position (kb) 5574
5575
5576 Strain fitness (log2 ratio) -2
-1
0
1 at 5573.522 kb on - strand at 5573.522 kb on - strand at 5573.522 kb on - strand at 5573.575 kb on + strand at 5573.605 kb on - strand at 5573.611 kb on - strand at 5573.729 kb on + strand, within BWI76_RS26865 at 5573.734 kb on + strand, within BWI76_RS26865 at 5573.734 kb on + strand, within BWI76_RS26865 at 5573.752 kb on - strand, within BWI76_RS26865 at 5573.778 kb on + strand, within BWI76_RS26865 at 5573.806 kb on - strand, within BWI76_RS26865 at 5573.888 kb on + strand, within BWI76_RS26865 at 5573.941 kb on + strand, within BWI76_RS26865 at 5573.993 kb on + strand, within BWI76_RS26865 at 5574.085 kb on - strand, within BWI76_RS26865 at 5574.119 kb on + strand, within BWI76_RS26865 at 5574.122 kb on - strand, within BWI76_RS26865 at 5574.139 kb on - strand, within BWI76_RS26865 at 5574.207 kb on + strand, within BWI76_RS26865 at 5574.364 kb on + strand, within BWI76_RS26865 at 5574.416 kb on - strand, within BWI76_RS26865 at 5574.462 kb on - strand at 5574.491 kb on - strand at 5574.494 kb on + strand at 5574.579 kb on + strand at 5574.603 kb on - strand at 5574.719 kb on - strand, within BWI76_RS26870 at 5574.920 kb on - strand, within BWI76_RS26870 at 5575.027 kb on + strand, within BWI76_RS26870 at 5575.061 kb on - strand, within BWI76_RS26870 at 5575.193 kb on - strand, within BWI76_RS26870 at 5575.242 kb on + strand, within BWI76_RS26870 at 5575.290 kb on - strand, within BWI76_RS26870 at 5575.411 kb on + strand at 5575.411 kb on + strand at 5575.526 kb on + strand at 5575.550 kb on + strand at 5575.565 kb on + strand at 5575.667 kb on + strand, within BWI76_RS26875 at 5575.766 kb on + strand, within BWI76_RS26875 at 5575.868 kb on + strand, within BWI76_RS26875 at 5576.093 kb on + strand, within BWI76_RS26875 at 5576.093 kb on + strand, within BWI76_RS26875 at 5576.310 kb on - strand at 5576.458 kb on - strand at 5576.469 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 5,573,522 - -1.1 5,573,522 - +0.2 5,573,522 - -0.3 5,573,575 + +0.2 5,573,605 - -0.4 5,573,611 - +0.8 5,573,729 + BWI76_RS26865 0.21 -0.4 5,573,734 + BWI76_RS26865 0.22 +0.3 5,573,734 + BWI76_RS26865 0.22 -0.1 5,573,752 - BWI76_RS26865 0.24 +0.5 5,573,778 + BWI76_RS26865 0.26 +0.4 5,573,806 - BWI76_RS26865 0.29 +1.0 5,573,888 + BWI76_RS26865 0.37 +0.6 5,573,941 + BWI76_RS26865 0.42 -0.8 5,573,993 + BWI76_RS26865 0.48 -0.6 5,574,085 - BWI76_RS26865 0.57 -0.8 5,574,119 + BWI76_RS26865 0.60 +1.5 5,574,122 - BWI76_RS26865 0.60 +0.3 5,574,139 - BWI76_RS26865 0.62 +0.1 5,574,207 + BWI76_RS26865 0.69 -0.7 5,574,364 + BWI76_RS26865 0.84 -0.4 5,574,416 - BWI76_RS26865 0.89 -1.1 5,574,462 - +0.2 5,574,491 - -1.4 5,574,494 + -0.3 5,574,579 + +0.0 5,574,603 - +0.8 5,574,719 - BWI76_RS26870 0.20 -0.2 5,574,920 - BWI76_RS26870 0.41 -2.2 5,575,027 + BWI76_RS26870 0.51 -1.2 5,575,061 - BWI76_RS26870 0.55 -2.0 5,575,193 - BWI76_RS26870 0.68 -0.5 5,575,242 + BWI76_RS26870 0.73 -1.1 5,575,290 - BWI76_RS26870 0.78 -0.6 5,575,411 + +0.1 5,575,411 + +0.2 5,575,526 + +0.7 5,575,550 + -0.5 5,575,565 + -0.4 5,575,667 + BWI76_RS26875 0.17 -0.2 5,575,766 + BWI76_RS26875 0.28 -1.2 5,575,868 + BWI76_RS26875 0.39 -0.9 5,576,093 + BWI76_RS26875 0.64 +0.0 5,576,093 + BWI76_RS26875 0.64 -0.3 5,576,310 - +0.7 5,576,458 - +0.7 5,576,469 - +0.9
Or see this region's nucleotide sequence