Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21750

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21745 and ABZR87_RS21750 are separated by 205 nucleotidesABZR87_RS21750 and ABZR87_RS21755 are separated by 20 nucleotides ABZR87_RS21745: ABZR87_RS21745 - M20 family peptidase, at 1,262,818 to 1,264,344 _RS21745 ABZR87_RS21750: ABZR87_RS21750 - MetQ/NlpA family ABC transporter substrate-binding protein, at 1,264,550 to 1,265,335 _RS21750 ABZR87_RS21755: ABZR87_RS21755 - ATP-binding cassette domain-containing protein, at 1,265,356 to 1,266,492 _RS21755 Position (kb) 1264 1265 1266Strain fitness (log2 ratio) -2 -1 0 1 2at 1263.932 kb on - strand, within ABZR87_RS21745at 1263.995 kb on + strand, within ABZR87_RS21745at 1263.996 kb on - strand, within ABZR87_RS21745at 1264.233 kb on + strandat 1264.233 kb on + strandat 1264.233 kb on + strandat 1264.233 kb on + strandat 1264.233 kb on + strandat 1264.233 kb on + strandat 1264.233 kb on + strandat 1264.233 kb on + strandat 1264.233 kb on + strandat 1264.234 kb on - strandat 1264.234 kb on - strandat 1264.234 kb on - strandat 1264.234 kb on - strandat 1264.234 kb on - strandat 1264.234 kb on - strandat 1264.234 kb on - strandat 1264.234 kb on - strandat 1264.234 kb on - strandat 1264.234 kb on - strandat 1264.330 kb on - strandat 1264.392 kb on + strandat 1264.392 kb on + strandat 1264.393 kb on - strandat 1264.393 kb on - strandat 1264.393 kb on - strandat 1264.393 kb on - strandat 1264.393 kb on - strandat 1264.423 kb on - strandat 1264.423 kb on - strandat 1264.431 kb on - strandat 1264.515 kb on + strandat 1264.515 kb on + strandat 1264.516 kb on - strandat 1264.751 kb on + strand, within ABZR87_RS21750at 1264.751 kb on + strand, within ABZR87_RS21750at 1264.752 kb on - strand, within ABZR87_RS21750at 1264.752 kb on - strand, within ABZR87_RS21750at 1264.752 kb on - strand, within ABZR87_RS21750at 1264.799 kb on + strand, within ABZR87_RS21750at 1264.847 kb on + strand, within ABZR87_RS21750at 1264.848 kb on - strand, within ABZR87_RS21750at 1265.061 kb on + strand, within ABZR87_RS21750at 1265.154 kb on - strand, within ABZR87_RS21750at 1265.246 kb on + strand, within ABZR87_RS21750at 1265.246 kb on + strand, within ABZR87_RS21750at 1265.247 kb on - strand, within ABZR87_RS21750at 1265.334 kb on - strandat 1265.341 kb on + strandat 1265.485 kb on + strand, within ABZR87_RS21755at 1265.486 kb on - strand, within ABZR87_RS21755at 1265.486 kb on - strand, within ABZR87_RS21755at 1265.750 kb on + strand, within ABZR87_RS21755at 1265.750 kb on + strand, within ABZR87_RS21755at 1265.751 kb on - strand, within ABZR87_RS21755at 1265.863 kb on + strand, within ABZR87_RS21755at 1265.863 kb on + strand, within ABZR87_RS21755at 1265.864 kb on - strand, within ABZR87_RS21755at 1266.275 kb on - strand, within ABZR87_RS21755

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,263,932 - ABZR87_RS21745 0.73 +0.7
1,263,995 + ABZR87_RS21745 0.77 -0.6
1,263,996 - ABZR87_RS21745 0.77 +0.6
1,264,233 + -0.4
1,264,233 + +1.2
1,264,233 + +0.1
1,264,233 + -0.4
1,264,233 + -0.2
1,264,233 + -0.8
1,264,233 + +1.3
1,264,233 + -1.0
1,264,233 + +0.1
1,264,234 - -1.1
1,264,234 - +0.0
1,264,234 - +0.3
1,264,234 - +0.4
1,264,234 - +2.0
1,264,234 - -1.0
1,264,234 - +0.7
1,264,234 - -0.4
1,264,234 - +1.4
1,264,234 - -0.5
1,264,330 - -0.1
1,264,392 + -1.1
1,264,392 + +1.2
1,264,393 - -0.6
1,264,393 - +0.0
1,264,393 - -0.6
1,264,393 - +1.0
1,264,393 - -0.1
1,264,423 - +1.2
1,264,423 - +0.2
1,264,431 - +0.2
1,264,515 + +0.2
1,264,515 + +0.4
1,264,516 - +0.1
1,264,751 + ABZR87_RS21750 0.26 -2.7
1,264,751 + ABZR87_RS21750 0.26 +0.4
1,264,752 - ABZR87_RS21750 0.26 +0.1
1,264,752 - ABZR87_RS21750 0.26 +0.1
1,264,752 - ABZR87_RS21750 0.26 +2.2
1,264,799 + ABZR87_RS21750 0.32 +0.9
1,264,847 + ABZR87_RS21750 0.38 +0.4
1,264,848 - ABZR87_RS21750 0.38 -0.8
1,265,061 + ABZR87_RS21750 0.65 +0.3
1,265,154 - ABZR87_RS21750 0.77 -0.0
1,265,246 + ABZR87_RS21750 0.89 -0.4
1,265,246 + ABZR87_RS21750 0.89 +0.3
1,265,247 - ABZR87_RS21750 0.89 +0.1
1,265,334 - -0.2
1,265,341 + +0.8
1,265,485 + ABZR87_RS21755 0.11 +0.4
1,265,486 - ABZR87_RS21755 0.11 -0.4
1,265,486 - ABZR87_RS21755 0.11 +0.5
1,265,750 + ABZR87_RS21755 0.35 -1.1
1,265,750 + ABZR87_RS21755 0.35 +0.0
1,265,751 - ABZR87_RS21755 0.35 +1.1
1,265,863 + ABZR87_RS21755 0.45 +0.5
1,265,863 + ABZR87_RS21755 0.45 -1.3
1,265,864 - ABZR87_RS21755 0.45 -1.4
1,266,275 - ABZR87_RS21755 0.81 -0.5

Or see this region's nucleotide sequence