Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21070

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21065 and ABZR87_RS21070 are separated by 28 nucleotidesABZR87_RS21070 and ABZR87_RS21075 are separated by 100 nucleotides ABZR87_RS21065: ABZR87_RS21065 - FAD-dependent oxidoreductase, at 1,108,950 to 1,110,245 _RS21065 ABZR87_RS21070: ABZR87_RS21070 - GTP cyclohydrolase I, at 1,110,274 to 1,111,002 _RS21070 ABZR87_RS21075: ABZR87_RS21075 - MerR family transcriptional regulator, at 1,111,103 to 1,112,089 _RS21075 Position (kb) 1110 1111 1112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1109.297 kb on - strand, within ABZR87_RS21065at 1109.470 kb on + strand, within ABZR87_RS21065at 1109.584 kb on + strand, within ABZR87_RS21065at 1109.584 kb on + strand, within ABZR87_RS21065at 1109.584 kb on + strand, within ABZR87_RS21065at 1109.584 kb on + strand, within ABZR87_RS21065at 1109.584 kb on + strand, within ABZR87_RS21065at 1109.584 kb on + strand, within ABZR87_RS21065at 1109.585 kb on - strand, within ABZR87_RS21065at 1109.585 kb on - strand, within ABZR87_RS21065at 1109.585 kb on - strand, within ABZR87_RS21065at 1109.585 kb on - strand, within ABZR87_RS21065at 1109.740 kb on + strand, within ABZR87_RS21065at 1109.740 kb on + strand, within ABZR87_RS21065at 1109.741 kb on - strand, within ABZR87_RS21065at 1109.741 kb on - strand, within ABZR87_RS21065at 1109.741 kb on - strand, within ABZR87_RS21065at 1109.765 kb on - strand, within ABZR87_RS21065at 1109.994 kb on + strand, within ABZR87_RS21065at 1110.031 kb on + strand, within ABZR87_RS21065at 1110.031 kb on + strand, within ABZR87_RS21065at 1110.104 kb on + strand, within ABZR87_RS21065at 1110.104 kb on + strand, within ABZR87_RS21065at 1110.105 kb on - strand, within ABZR87_RS21065at 1110.105 kb on - strand, within ABZR87_RS21065at 1110.105 kb on - strand, within ABZR87_RS21065at 1110.105 kb on - strand, within ABZR87_RS21065at 1110.407 kb on + strand, within ABZR87_RS21070at 1110.408 kb on - strand, within ABZR87_RS21070at 1110.537 kb on - strand, within ABZR87_RS21070at 1110.537 kb on - strand, within ABZR87_RS21070at 1110.713 kb on + strand, within ABZR87_RS21070at 1110.714 kb on - strand, within ABZR87_RS21070at 1110.876 kb on - strand, within ABZR87_RS21070at 1110.876 kb on - strand, within ABZR87_RS21070at 1111.094 kb on + strandat 1111.094 kb on + strandat 1111.095 kb on - strandat 1111.095 kb on - strandat 1111.095 kb on - strandat 1111.096 kb on + strandat 1111.096 kb on + strandat 1111.096 kb on + strandat 1111.097 kb on - strandat 1111.146 kb on + strandat 1111.198 kb on - strandat 1111.413 kb on - strand, within ABZR87_RS21075at 1111.502 kb on - strand, within ABZR87_RS21075at 1111.503 kb on + strand, within ABZR87_RS21075at 1111.530 kb on + strand, within ABZR87_RS21075at 1111.531 kb on - strand, within ABZR87_RS21075at 1111.805 kb on + strand, within ABZR87_RS21075at 1111.806 kb on - strand, within ABZR87_RS21075at 1111.932 kb on + strand, within ABZR87_RS21075at 1111.933 kb on - strand, within ABZR87_RS21075at 1111.933 kb on - strand, within ABZR87_RS21075at 1111.978 kb on - strand, within ABZR87_RS21075

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,109,297 - ABZR87_RS21065 0.27 -0.2
1,109,470 + ABZR87_RS21065 0.40 -0.8
1,109,584 + ABZR87_RS21065 0.49 +0.3
1,109,584 + ABZR87_RS21065 0.49 -0.8
1,109,584 + ABZR87_RS21065 0.49 +0.3
1,109,584 + ABZR87_RS21065 0.49 -0.6
1,109,584 + ABZR87_RS21065 0.49 +0.3
1,109,584 + ABZR87_RS21065 0.49 -0.9
1,109,585 - ABZR87_RS21065 0.49 +1.3
1,109,585 - ABZR87_RS21065 0.49 +1.2
1,109,585 - ABZR87_RS21065 0.49 +0.9
1,109,585 - ABZR87_RS21065 0.49 +0.4
1,109,740 + ABZR87_RS21065 0.61 -0.3
1,109,740 + ABZR87_RS21065 0.61 -0.2
1,109,741 - ABZR87_RS21065 0.61 -0.8
1,109,741 - ABZR87_RS21065 0.61 -0.2
1,109,741 - ABZR87_RS21065 0.61 -1.3
1,109,765 - ABZR87_RS21065 0.63 +0.4
1,109,994 + ABZR87_RS21065 0.81 -1.5
1,110,031 + ABZR87_RS21065 0.83 +0.8
1,110,031 + ABZR87_RS21065 0.83 -2.7
1,110,104 + ABZR87_RS21065 0.89 +0.5
1,110,104 + ABZR87_RS21065 0.89 -0.1
1,110,105 - ABZR87_RS21065 0.89 -0.1
1,110,105 - ABZR87_RS21065 0.89 +0.7
1,110,105 - ABZR87_RS21065 0.89 +0.3
1,110,105 - ABZR87_RS21065 0.89 -0.1
1,110,407 + ABZR87_RS21070 0.18 +1.1
1,110,408 - ABZR87_RS21070 0.18 +0.1
1,110,537 - ABZR87_RS21070 0.36 +0.2
1,110,537 - ABZR87_RS21070 0.36 +0.1
1,110,713 + ABZR87_RS21070 0.60 -0.3
1,110,714 - ABZR87_RS21070 0.60 +0.4
1,110,876 - ABZR87_RS21070 0.83 +0.0
1,110,876 - ABZR87_RS21070 0.83 +2.1
1,111,094 + +0.2
1,111,094 + -0.0
1,111,095 - -0.4
1,111,095 - +0.4
1,111,095 - +1.0
1,111,096 + +0.2
1,111,096 + +0.3
1,111,096 + +1.1
1,111,097 - +0.3
1,111,146 + -0.9
1,111,198 - +0.0
1,111,413 - ABZR87_RS21075 0.31 -0.1
1,111,502 - ABZR87_RS21075 0.40 +0.7
1,111,503 + ABZR87_RS21075 0.41 +0.3
1,111,530 + ABZR87_RS21075 0.43 +1.0
1,111,531 - ABZR87_RS21075 0.43 +0.5
1,111,805 + ABZR87_RS21075 0.71 +0.0
1,111,806 - ABZR87_RS21075 0.71 +0.9
1,111,932 + ABZR87_RS21075 0.84 -2.9
1,111,933 - ABZR87_RS21075 0.84 +0.2
1,111,933 - ABZR87_RS21075 0.84 +0.9
1,111,978 - ABZR87_RS21075 0.89 +1.0

Or see this region's nucleotide sequence