Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18930 and ABZR87_RS18935 are separated by 57 nucleotides ABZR87_RS18935 and ABZR87_RS18940 are separated by 9 nucleotides ABZR87_RS18940 and ABZR87_RS18945 are separated by 132 nucleotides
ABZR87_RS18930: ABZR87_RS18930 - porin, at 603,249 to 604,382
_RS18930
ABZR87_RS18935: ABZR87_RS18935 - TauD/TfdA family dioxygenase, at 604,440 to 605,288
_RS18935
ABZR87_RS18940: ABZR87_RS18940 - quinone oxidoreductase, at 605,298 to 606,278
_RS18940
ABZR87_RS18945: ABZR87_RS18945 - MFS transporter, at 606,411 to 607,748
_RS18945
Position (kb) 605
606
607 Strain fitness (log2 ratio) -2
-1
0
1 at 604.304 kb on - strand at 604.442 kb on - strand at 604.498 kb on + strand at 604.499 kb on - strand at 604.513 kb on + strand at 604.514 kb on - strand at 604.580 kb on - strand, within ABZR87_RS18935 at 604.591 kb on + strand, within ABZR87_RS18935 at 604.591 kb on + strand, within ABZR87_RS18935 at 604.591 kb on + strand, within ABZR87_RS18935 at 604.591 kb on + strand, within ABZR87_RS18935 at 604.592 kb on - strand, within ABZR87_RS18935 at 604.592 kb on - strand, within ABZR87_RS18935 at 604.592 kb on - strand, within ABZR87_RS18935 at 604.592 kb on - strand, within ABZR87_RS18935 at 604.592 kb on - strand, within ABZR87_RS18935 at 604.676 kb on - strand, within ABZR87_RS18935 at 604.708 kb on + strand, within ABZR87_RS18935 at 604.708 kb on + strand, within ABZR87_RS18935 at 604.708 kb on + strand, within ABZR87_RS18935 at 604.708 kb on + strand, within ABZR87_RS18935 at 604.708 kb on + strand, within ABZR87_RS18935 at 604.709 kb on - strand, within ABZR87_RS18935 at 604.709 kb on - strand, within ABZR87_RS18935 at 604.889 kb on - strand, within ABZR87_RS18935 at 605.041 kb on + strand, within ABZR87_RS18935 at 605.041 kb on + strand, within ABZR87_RS18935 at 605.042 kb on - strand, within ABZR87_RS18935 at 605.042 kb on - strand, within ABZR87_RS18935 at 605.377 kb on + strand at 605.377 kb on + strand at 605.378 kb on - strand at 605.470 kb on + strand, within ABZR87_RS18940 at 605.470 kb on + strand, within ABZR87_RS18940 at 605.471 kb on - strand, within ABZR87_RS18940 at 605.498 kb on - strand, within ABZR87_RS18940 at 605.701 kb on + strand, within ABZR87_RS18940 at 605.702 kb on - strand, within ABZR87_RS18940 at 605.702 kb on - strand, within ABZR87_RS18940 at 605.869 kb on + strand, within ABZR87_RS18940 at 605.870 kb on - strand, within ABZR87_RS18940 at 605.887 kb on + strand, within ABZR87_RS18940 at 605.993 kb on - strand, within ABZR87_RS18940 at 606.125 kb on - strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.143 kb on - strand, within ABZR87_RS18940 at 606.143 kb on - strand, within ABZR87_RS18940 at 606.282 kb on + strand at 606.282 kb on + strand at 606.295 kb on - strand at 606.494 kb on - strand at 606.494 kb on - strand at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.679 kb on - strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.166 kb on - strand, within ABZR87_RS18945 at 607.166 kb on - strand, within ABZR87_RS18945
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 604,304 - -0.0 604,442 - -2.7 604,498 + -0.3 604,499 - -1.3 604,513 + -0.4 604,514 - -1.2 604,580 - ABZR87_RS18935 0.16 -2.5 604,591 + ABZR87_RS18935 0.18 +0.1 604,591 + ABZR87_RS18935 0.18 -0.9 604,591 + ABZR87_RS18935 0.18 -0.3 604,591 + ABZR87_RS18935 0.18 +0.0 604,592 - ABZR87_RS18935 0.18 -0.5 604,592 - ABZR87_RS18935 0.18 -1.0 604,592 - ABZR87_RS18935 0.18 -1.5 604,592 - ABZR87_RS18935 0.18 -1.2 604,592 - ABZR87_RS18935 0.18 +0.8 604,676 - ABZR87_RS18935 0.28 -1.8 604,708 + ABZR87_RS18935 0.32 +0.3 604,708 + ABZR87_RS18935 0.32 +0.3 604,708 + ABZR87_RS18935 0.32 +0.2 604,708 + ABZR87_RS18935 0.32 +0.1 604,708 + ABZR87_RS18935 0.32 +0.1 604,709 - ABZR87_RS18935 0.32 +0.1 604,709 - ABZR87_RS18935 0.32 -1.3 604,889 - ABZR87_RS18935 0.53 -1.4 605,041 + ABZR87_RS18935 0.71 -0.2 605,041 + ABZR87_RS18935 0.71 +0.1 605,042 - ABZR87_RS18935 0.71 -0.7 605,042 - ABZR87_RS18935 0.71 +0.0 605,377 + -0.4 605,377 + -1.0 605,378 - -1.2 605,470 + ABZR87_RS18940 0.18 -1.5 605,470 + ABZR87_RS18940 0.18 +0.2 605,471 - ABZR87_RS18940 0.18 -0.9 605,498 - ABZR87_RS18940 0.20 -1.4 605,701 + ABZR87_RS18940 0.41 -0.1 605,702 - ABZR87_RS18940 0.41 -1.6 605,702 - ABZR87_RS18940 0.41 -1.7 605,869 + ABZR87_RS18940 0.58 -0.7 605,870 - ABZR87_RS18940 0.58 -0.3 605,887 + ABZR87_RS18940 0.60 -0.7 605,993 - ABZR87_RS18940 0.71 +0.8 606,125 - ABZR87_RS18940 0.84 -0.0 606,142 + ABZR87_RS18940 0.86 -0.1 606,142 + ABZR87_RS18940 0.86 -1.9 606,142 + ABZR87_RS18940 0.86 +0.7 606,142 + ABZR87_RS18940 0.86 +0.2 606,143 - ABZR87_RS18940 0.86 -0.8 606,143 - ABZR87_RS18940 0.86 -0.5 606,282 + -0.9 606,282 + +0.1 606,295 - -0.9 606,494 - -0.6 606,494 - -0.9 606,678 + ABZR87_RS18945 0.20 -0.8 606,678 + ABZR87_RS18945 0.20 +0.1 606,678 + ABZR87_RS18945 0.20 -0.6 606,678 + ABZR87_RS18945 0.20 -0.6 606,678 + ABZR87_RS18945 0.20 -0.4 606,678 + ABZR87_RS18945 0.20 -0.1 606,678 + ABZR87_RS18945 0.20 -0.3 606,679 - ABZR87_RS18945 0.20 +0.7 607,165 + ABZR87_RS18945 0.56 +0.3 607,165 + ABZR87_RS18945 0.56 +0.4 607,165 + ABZR87_RS18945 0.56 -0.7 607,165 + ABZR87_RS18945 0.56 -0.3 607,165 + ABZR87_RS18945 0.56 -0.6 607,165 + ABZR87_RS18945 0.56 -1.2 607,166 - ABZR87_RS18945 0.56 -0.1 607,166 - ABZR87_RS18945 0.56 -1.7
Or see this region's nucleotide sequence