Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15630

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15625 and ABZR87_RS15630 are separated by 46 nucleotidesABZR87_RS15630 and ABZR87_RS15635 are separated by 259 nucleotides ABZR87_RS15625: ABZR87_RS15625 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 3,294,913 to 3,295,956 _RS15625 ABZR87_RS15630: ABZR87_RS15630 - GTP cyclohydrolase FolE2, at 3,296,003 to 3,296,809 _RS15630 ABZR87_RS15635: ABZR87_RS15635 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,297,069 to 3,298,979 _RS15635 Position (kb) 3296 3297Strain fitness (log2 ratio) -1 0 1at 3296.004 kb on + strandat 3296.004 kb on + strandat 3296.004 kb on + strandat 3296.004 kb on + strandat 3296.004 kb on + strandat 3296.005 kb on - strandat 3296.005 kb on - strandat 3296.005 kb on - strandat 3296.005 kb on - strandat 3296.005 kb on - strandat 3296.005 kb on - strandat 3296.008 kb on + strandat 3296.009 kb on - strandat 3296.824 kb on - strandat 3296.953 kb on - strandat 3296.953 kb on - strandat 3296.953 kb on - strandat 3296.968 kb on + strandat 3296.968 kb on + strandat 3296.968 kb on + strandat 3296.969 kb on - strandat 3296.998 kb on + strandat 3297.039 kb on + strandat 3297.046 kb on + strandat 3297.102 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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3,296,004 + +0.1
3,296,004 + +0.8
3,296,004 + +0.9
3,296,004 + +1.6
3,296,004 + -0.0
3,296,005 - +0.1
3,296,005 - +0.1
3,296,005 - +1.6
3,296,005 - +0.1
3,296,005 - +0.4
3,296,005 - +0.7
3,296,008 + +0.4
3,296,009 - -0.9
3,296,824 - -0.3
3,296,953 - +1.5
3,296,953 - +0.2
3,296,953 - +0.5
3,296,968 + +0.6
3,296,968 + -0.0
3,296,968 + +1.1
3,296,969 - +0.1
3,296,998 + +0.5
3,297,039 + +0.3
3,297,046 + +1.3
3,297,102 + -0.0

Or see this region's nucleotide sequence