Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14480

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14470 and ABZR87_RS14475 are separated by 66 nucleotidesABZR87_RS14475 and ABZR87_RS14480 are separated by 13 nucleotidesABZR87_RS14480 and ABZR87_RS14485 are separated by 93 nucleotidesABZR87_RS14485 and ABZR87_RS14490 are separated by 30 nucleotides ABZR87_RS14470: ABZR87_RS14470 - CvpA family protein, at 3,056,688 to 3,057,185 _RS14470 ABZR87_RS14475: ABZR87_RS14475 - SPOR domain-containing protein, at 3,057,252 to 3,058,109 _RS14475 ABZR87_RS14480: ABZR87_RS14480 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 3,058,123 to 3,059,421 _RS14480 ABZR87_RS14485: ABZR87_RS14485 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 3,059,515 to 3,060,387 _RS14485 ABZR87_RS14490: ABZR87_RS14490 - tryptophan synthase subunit alpha, at 3,060,418 to 3,061,215 _RS14490 Position (kb) 3058 3059 3060Strain fitness (log2 ratio) -1 0 1 2 3 4at 3057.163 kb on + strandat 3057.164 kb on - strandat 3057.164 kb on - strandat 3057.164 kb on - strandat 3057.164 kb on - strandat 3057.233 kb on + strandat 3057.234 kb on - strandat 3057.234 kb on - strandat 3057.262 kb on - strandat 3057.262 kb on - strandat 3057.391 kb on + strand, within ABZR87_RS14475at 3058.125 kb on - strandat 3059.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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3,057,163 + +2.3
3,057,164 - -0.5
3,057,164 - +0.3
3,057,164 - -0.4
3,057,164 - +2.1
3,057,233 + +4.5
3,057,234 - +0.6
3,057,234 - +0.4
3,057,262 - +0.8
3,057,262 - +0.1
3,057,391 + ABZR87_RS14475 0.16 +3.1
3,058,125 - -0.3
3,059,429 - +0.3

Or see this region's nucleotide sequence