Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14470 and ABZR87_RS14475 are separated by 66 nucleotides ABZR87_RS14475 and ABZR87_RS14480 are separated by 13 nucleotides ABZR87_RS14480 and ABZR87_RS14485 are separated by 93 nucleotides ABZR87_RS14485 and ABZR87_RS14490 are separated by 30 nucleotides
ABZR87_RS14470: ABZR87_RS14470 - CvpA family protein, at 3,056,688 to 3,057,185
_RS14470
ABZR87_RS14475: ABZR87_RS14475 - SPOR domain-containing protein, at 3,057,252 to 3,058,109
_RS14475
ABZR87_RS14480: ABZR87_RS14480 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 3,058,123 to 3,059,421
_RS14480
ABZR87_RS14485: ABZR87_RS14485 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 3,059,515 to 3,060,387
_RS14485
ABZR87_RS14490: ABZR87_RS14490 - tryptophan synthase subunit alpha, at 3,060,418 to 3,061,215
_RS14490
Position (kb)
3058
3059
3060 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3057.163 kb on + strand at 3057.164 kb on - strand at 3057.164 kb on - strand at 3057.164 kb on - strand at 3057.164 kb on - strand at 3057.233 kb on + strand at 3057.234 kb on - strand at 3057.234 kb on - strand at 3057.262 kb on - strand at 3057.262 kb on - strand at 3057.391 kb on + strand, within ABZR87_RS14475 at 3058.125 kb on - strand at 3059.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 3,057,163 + +2.3 3,057,164 - -0.5 3,057,164 - +0.3 3,057,164 - -0.4 3,057,164 - +2.1 3,057,233 + +4.5 3,057,234 - +0.6 3,057,234 - +0.4 3,057,262 - +0.8 3,057,262 - +0.1 3,057,391 + ABZR87_RS14475 0.16 +3.1 3,058,125 - -0.3 3,059,429 - +0.3
Or see this region's nucleotide sequence