Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13485

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS13475 and ABZR87_RS13480 are separated by 40 nucleotidesABZR87_RS13480 and ABZR87_RS13485 are separated by 95 nucleotidesABZR87_RS13485 and ABZR87_RS13490 are separated by 94 nucleotides ABZR87_RS13475: ABZR87_RS13475 - PAS domain S-box protein, at 2,855,666 to 2,858,194 _RS13475 ABZR87_RS13480: ABZR87_RS13480 - response regulator transcription factor, at 2,858,235 to 2,858,870 _RS13480 ABZR87_RS13485: ABZR87_RS13485 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 2,858,966 to 2,859,835 _RS13485 ABZR87_RS13490: ABZR87_RS13490 - M3 family metallopeptidase, at 2,859,930 to 2,862,044 _RS13490 Position (kb) 2858 2859 2860Strain fitness (log2 ratio) -1 0 1 2 3 4at 2858.053 kb on + strandat 2858.086 kb on + strandat 2858.086 kb on + strandat 2858.087 kb on - strandat 2858.087 kb on - strandat 2858.103 kb on + strandat 2858.103 kb on + strandat 2858.103 kb on + strandat 2858.104 kb on - strandat 2858.104 kb on - strandat 2858.104 kb on - strandat 2858.104 kb on - strandat 2858.104 kb on - strandat 2858.104 kb on - strandat 2858.104 kb on - strandat 2858.104 kb on - strandat 2858.159 kb on - strandat 2858.193 kb on - strandat 2858.204 kb on - strandat 2858.210 kb on + strandat 2858.210 kb on + strandat 2858.210 kb on + strandat 2858.210 kb on + strandat 2858.210 kb on + strandat 2858.210 kb on + strandat 2858.211 kb on - strandat 2858.211 kb on - strandat 2858.217 kb on + strandat 2858.217 kb on + strandat 2858.218 kb on - strandat 2858.218 kb on - strandat 2858.343 kb on + strand, within ABZR87_RS13480at 2858.928 kb on + strandat 2858.928 kb on + strandat 2858.929 kb on - strandat 2858.929 kb on - strandat 2858.929 kb on - strandat 2858.930 kb on + strandat 2859.833 kb on + strandat 2859.833 kb on + strandat 2859.939 kb on - strandat 2860.290 kb on + strand, within ABZR87_RS13490at 2860.290 kb on + strand, within ABZR87_RS13490at 2860.290 kb on + strand, within ABZR87_RS13490at 2860.290 kb on + strand, within ABZR87_RS13490at 2860.291 kb on - strand, within ABZR87_RS13490at 2860.291 kb on - strand, within ABZR87_RS13490at 2860.291 kb on - strand, within ABZR87_RS13490at 2860.291 kb on - strand, within ABZR87_RS13490at 2860.492 kb on - strand, within ABZR87_RS13490at 2860.623 kb on + strand, within ABZR87_RS13490at 2860.623 kb on + strand, within ABZR87_RS13490at 2860.624 kb on - strand, within ABZR87_RS13490at 2860.624 kb on - strand, within ABZR87_RS13490at 2860.642 kb on - strand, within ABZR87_RS13490at 2860.674 kb on + strand, within ABZR87_RS13490at 2860.675 kb on - strand, within ABZR87_RS13490at 2860.675 kb on - strand, within ABZR87_RS13490at 2860.675 kb on - strand, within ABZR87_RS13490at 2860.716 kb on + strand, within ABZR87_RS13490at 2860.716 kb on + strand, within ABZR87_RS13490at 2860.804 kb on - strand, within ABZR87_RS13490

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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2,858,053 + +3.1
2,858,086 + +2.1
2,858,086 + +2.6
2,858,087 - +3.1
2,858,087 - +1.2
2,858,103 + +3.1
2,858,103 + +2.5
2,858,103 + +3.8
2,858,104 - +1.7
2,858,104 - +1.7
2,858,104 - +1.4
2,858,104 - +2.6
2,858,104 - +3.7
2,858,104 - +1.3
2,858,104 - +2.0
2,858,104 - +1.4
2,858,159 - +1.7
2,858,193 - +3.5
2,858,204 - +1.4
2,858,210 + -0.3
2,858,210 + +0.7
2,858,210 + +0.7
2,858,210 + +0.2
2,858,210 + -0.3
2,858,210 + +0.4
2,858,211 - +2.2
2,858,211 - +3.8
2,858,217 + +1.3
2,858,217 + +0.3
2,858,218 - +2.3
2,858,218 - +3.0
2,858,343 + ABZR87_RS13480 0.17 +1.8
2,858,928 + +1.4
2,858,928 + +1.3
2,858,929 - -1.1
2,858,929 - +0.6
2,858,929 - -0.9
2,858,930 + +2.7
2,859,833 + +0.8
2,859,833 + -0.1
2,859,939 - +0.7
2,860,290 + ABZR87_RS13490 0.17 +0.5
2,860,290 + ABZR87_RS13490 0.17 +0.2
2,860,290 + ABZR87_RS13490 0.17 +0.4
2,860,290 + ABZR87_RS13490 0.17 -1.7
2,860,291 - ABZR87_RS13490 0.17 +0.8
2,860,291 - ABZR87_RS13490 0.17 -0.3
2,860,291 - ABZR87_RS13490 0.17 -0.6
2,860,291 - ABZR87_RS13490 0.17 +0.2
2,860,492 - ABZR87_RS13490 0.27 -0.5
2,860,623 + ABZR87_RS13490 0.33 +0.2
2,860,623 + ABZR87_RS13490 0.33 -1.7
2,860,624 - ABZR87_RS13490 0.33 -0.5
2,860,624 - ABZR87_RS13490 0.33 +0.7
2,860,642 - ABZR87_RS13490 0.34 +0.3
2,860,674 + ABZR87_RS13490 0.35 +0.5
2,860,675 - ABZR87_RS13490 0.35 +0.9
2,860,675 - ABZR87_RS13490 0.35 -1.1
2,860,675 - ABZR87_RS13490 0.35 -0.1
2,860,716 + ABZR87_RS13490 0.37 -0.1
2,860,716 + ABZR87_RS13490 0.37 +0.9
2,860,804 - ABZR87_RS13490 0.41 -0.0

Or see this region's nucleotide sequence