Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS13475 and ABZR87_RS13480 are separated by 40 nucleotides ABZR87_RS13480 and ABZR87_RS13485 are separated by 95 nucleotides ABZR87_RS13485 and ABZR87_RS13490 are separated by 94 nucleotides
ABZR87_RS13475: ABZR87_RS13475 - PAS domain S-box protein, at 2,855,666 to 2,858,194
_RS13475
ABZR87_RS13480: ABZR87_RS13480 - response regulator transcription factor, at 2,858,235 to 2,858,870
_RS13480
ABZR87_RS13485: ABZR87_RS13485 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 2,858,966 to 2,859,835
_RS13485
ABZR87_RS13490: ABZR87_RS13490 - M3 family metallopeptidase, at 2,859,930 to 2,862,044
_RS13490
Position (kb)
2858
2859
2860 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2858.053 kb on + strand at 2858.086 kb on + strand at 2858.086 kb on + strand at 2858.087 kb on - strand at 2858.087 kb on - strand at 2858.103 kb on + strand at 2858.103 kb on + strand at 2858.103 kb on + strand at 2858.104 kb on - strand at 2858.104 kb on - strand at 2858.104 kb on - strand at 2858.104 kb on - strand at 2858.104 kb on - strand at 2858.104 kb on - strand at 2858.104 kb on - strand at 2858.104 kb on - strand at 2858.159 kb on - strand at 2858.193 kb on - strand at 2858.204 kb on - strand at 2858.210 kb on + strand at 2858.210 kb on + strand at 2858.210 kb on + strand at 2858.210 kb on + strand at 2858.210 kb on + strand at 2858.210 kb on + strand at 2858.211 kb on - strand at 2858.211 kb on - strand at 2858.217 kb on + strand at 2858.217 kb on + strand at 2858.218 kb on - strand at 2858.218 kb on - strand at 2858.343 kb on + strand, within ABZR87_RS13480 at 2858.928 kb on + strand at 2858.928 kb on + strand at 2858.929 kb on - strand at 2858.929 kb on - strand at 2858.929 kb on - strand at 2858.930 kb on + strand at 2859.833 kb on + strand at 2859.833 kb on + strand at 2859.939 kb on - strand at 2860.290 kb on + strand, within ABZR87_RS13490 at 2860.290 kb on + strand, within ABZR87_RS13490 at 2860.290 kb on + strand, within ABZR87_RS13490 at 2860.290 kb on + strand, within ABZR87_RS13490 at 2860.291 kb on - strand, within ABZR87_RS13490 at 2860.291 kb on - strand, within ABZR87_RS13490 at 2860.291 kb on - strand, within ABZR87_RS13490 at 2860.291 kb on - strand, within ABZR87_RS13490 at 2860.492 kb on - strand, within ABZR87_RS13490 at 2860.623 kb on + strand, within ABZR87_RS13490 at 2860.623 kb on + strand, within ABZR87_RS13490 at 2860.624 kb on - strand, within ABZR87_RS13490 at 2860.624 kb on - strand, within ABZR87_RS13490 at 2860.642 kb on - strand, within ABZR87_RS13490 at 2860.674 kb on + strand, within ABZR87_RS13490 at 2860.675 kb on - strand, within ABZR87_RS13490 at 2860.675 kb on - strand, within ABZR87_RS13490 at 2860.675 kb on - strand, within ABZR87_RS13490 at 2860.716 kb on + strand, within ABZR87_RS13490 at 2860.716 kb on + strand, within ABZR87_RS13490 at 2860.804 kb on - strand, within ABZR87_RS13490
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 2,858,053 + +3.1 2,858,086 + +2.1 2,858,086 + +2.6 2,858,087 - +3.1 2,858,087 - +1.2 2,858,103 + +3.1 2,858,103 + +2.5 2,858,103 + +3.8 2,858,104 - +1.7 2,858,104 - +1.7 2,858,104 - +1.4 2,858,104 - +2.6 2,858,104 - +3.7 2,858,104 - +1.3 2,858,104 - +2.0 2,858,104 - +1.4 2,858,159 - +1.7 2,858,193 - +3.5 2,858,204 - +1.4 2,858,210 + -0.3 2,858,210 + +0.7 2,858,210 + +0.7 2,858,210 + +0.2 2,858,210 + -0.3 2,858,210 + +0.4 2,858,211 - +2.2 2,858,211 - +3.8 2,858,217 + +1.3 2,858,217 + +0.3 2,858,218 - +2.3 2,858,218 - +3.0 2,858,343 + ABZR87_RS13480 0.17 +1.8 2,858,928 + +1.4 2,858,928 + +1.3 2,858,929 - -1.1 2,858,929 - +0.6 2,858,929 - -0.9 2,858,930 + +2.7 2,859,833 + +0.8 2,859,833 + -0.1 2,859,939 - +0.7 2,860,290 + ABZR87_RS13490 0.17 +0.5 2,860,290 + ABZR87_RS13490 0.17 +0.2 2,860,290 + ABZR87_RS13490 0.17 +0.4 2,860,290 + ABZR87_RS13490 0.17 -1.7 2,860,291 - ABZR87_RS13490 0.17 +0.8 2,860,291 - ABZR87_RS13490 0.17 -0.3 2,860,291 - ABZR87_RS13490 0.17 -0.6 2,860,291 - ABZR87_RS13490 0.17 +0.2 2,860,492 - ABZR87_RS13490 0.27 -0.5 2,860,623 + ABZR87_RS13490 0.33 +0.2 2,860,623 + ABZR87_RS13490 0.33 -1.7 2,860,624 - ABZR87_RS13490 0.33 -0.5 2,860,624 - ABZR87_RS13490 0.33 +0.7 2,860,642 - ABZR87_RS13490 0.34 +0.3 2,860,674 + ABZR87_RS13490 0.35 +0.5 2,860,675 - ABZR87_RS13490 0.35 +0.9 2,860,675 - ABZR87_RS13490 0.35 -1.1 2,860,675 - ABZR87_RS13490 0.35 -0.1 2,860,716 + ABZR87_RS13490 0.37 -0.1 2,860,716 + ABZR87_RS13490 0.37 +0.9 2,860,804 - ABZR87_RS13490 0.41 -0.0
Or see this region's nucleotide sequence