Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11645

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11635 and ABZR87_RS11640 are separated by 43 nucleotidesABZR87_RS11640 and ABZR87_RS11645 are separated by 173 nucleotidesABZR87_RS11645 and ABZR87_RS11650 overlap by 4 nucleotidesABZR87_RS11650 and ABZR87_RS11655 overlap by 4 nucleotides ABZR87_RS11635: ABZR87_RS11635 - DHA2 family efflux MFS transporter permease subunit, at 2,465,960 to 2,467,417 _RS11635 ABZR87_RS11640: ABZR87_RS11640 - acyl-CoA-binding protein, at 2,467,461 to 2,467,730 _RS11640 ABZR87_RS11645: ABZR87_RS11645 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 2,467,904 to 2,468,641 _RS11645 ABZR87_RS11650: ABZR87_RS11650 - ribosomal protein S18-alanine N-acetyltransferase, at 2,468,638 to 2,469,165 _RS11650 ABZR87_RS11655: ABZR87_RS11655 - uracil-DNA glycosylase, at 2,469,162 to 2,469,968 _RS11655 Position (kb) 2467 2468 2469Strain fitness (log2 ratio) -2 -1 0 1 2at 2467.052 kb on + strand, within ABZR87_RS11635at 2467.052 kb on + strand, within ABZR87_RS11635at 2467.052 kb on + strand, within ABZR87_RS11635at 2467.053 kb on - strand, within ABZR87_RS11635at 2467.053 kb on - strand, within ABZR87_RS11635at 2467.390 kb on - strandat 2467.504 kb on + strand, within ABZR87_RS11640at 2467.504 kb on + strand, within ABZR87_RS11640at 2467.504 kb on + strand, within ABZR87_RS11640at 2467.504 kb on + strand, within ABZR87_RS11640at 2467.505 kb on - strand, within ABZR87_RS11640at 2467.505 kb on - strand, within ABZR87_RS11640at 2467.564 kb on + strand, within ABZR87_RS11640at 2467.584 kb on - strand, within ABZR87_RS11640at 2467.630 kb on + strand, within ABZR87_RS11640at 2467.630 kb on + strand, within ABZR87_RS11640at 2467.631 kb on - strand, within ABZR87_RS11640at 2467.631 kb on - strand, within ABZR87_RS11640at 2467.631 kb on - strand, within ABZR87_RS11640at 2467.639 kb on + strand, within ABZR87_RS11640at 2467.639 kb on + strand, within ABZR87_RS11640at 2467.640 kb on - strand, within ABZR87_RS11640at 2467.640 kb on - strand, within ABZR87_RS11640at 2467.768 kb on - strandat 2467.768 kb on - strandat 2467.892 kb on + strandat 2467.892 kb on + strandat 2467.892 kb on + strandat 2467.892 kb on + strandat 2467.893 kb on - strandat 2467.893 kb on - strandat 2467.893 kb on - strandat 2469.040 kb on + strand, within ABZR87_RS11650at 2469.040 kb on + strand, within ABZR87_RS11650at 2469.040 kb on + strand, within ABZR87_RS11650at 2469.040 kb on + strand, within ABZR87_RS11650at 2469.041 kb on - strand, within ABZR87_RS11650at 2469.082 kb on + strand, within ABZR87_RS11650at 2469.082 kb on + strand, within ABZR87_RS11650at 2469.085 kb on + strand, within ABZR87_RS11650

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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2,467,052 + ABZR87_RS11635 0.75 -0.1
2,467,052 + ABZR87_RS11635 0.75 +0.3
2,467,052 + ABZR87_RS11635 0.75 +1.4
2,467,053 - ABZR87_RS11635 0.75 -0.8
2,467,053 - ABZR87_RS11635 0.75 -0.1
2,467,390 - +1.0
2,467,504 + ABZR87_RS11640 0.16 +0.3
2,467,504 + ABZR87_RS11640 0.16 -2.0
2,467,504 + ABZR87_RS11640 0.16 +0.6
2,467,504 + ABZR87_RS11640 0.16 -0.8
2,467,505 - ABZR87_RS11640 0.16 -0.1
2,467,505 - ABZR87_RS11640 0.16 +0.4
2,467,564 + ABZR87_RS11640 0.38 +1.1
2,467,584 - ABZR87_RS11640 0.46 +0.1
2,467,630 + ABZR87_RS11640 0.63 -0.9
2,467,630 + ABZR87_RS11640 0.63 +0.5
2,467,631 - ABZR87_RS11640 0.63 +0.9
2,467,631 - ABZR87_RS11640 0.63 +0.4
2,467,631 - ABZR87_RS11640 0.63 -0.1
2,467,639 + ABZR87_RS11640 0.66 +0.1
2,467,639 + ABZR87_RS11640 0.66 +0.5
2,467,640 - ABZR87_RS11640 0.66 +1.3
2,467,640 - ABZR87_RS11640 0.66 +0.6
2,467,768 - +0.7
2,467,768 - -0.3
2,467,892 + -0.1
2,467,892 + +2.2
2,467,892 + +0.5
2,467,892 + +0.4
2,467,893 - +0.4
2,467,893 - -0.1
2,467,893 - +0.0
2,469,040 + ABZR87_RS11650 0.76 -1.1
2,469,040 + ABZR87_RS11650 0.76 +0.5
2,469,040 + ABZR87_RS11650 0.76 -1.0
2,469,040 + ABZR87_RS11650 0.76 -1.2
2,469,041 - ABZR87_RS11650 0.76 -2.7
2,469,082 + ABZR87_RS11650 0.84 -0.9
2,469,082 + ABZR87_RS11650 0.84 -0.1
2,469,085 + ABZR87_RS11650 0.85 -0.7

Or see this region's nucleotide sequence