Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10830

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10825 and ABZR87_RS10830 are separated by 89 nucleotidesABZR87_RS10830 and ABZR87_RS10835 are separated by 64 nucleotidesABZR87_RS10835 and ABZR87_RS10840 are separated by 23 nucleotides ABZR87_RS10825: ABZR87_RS10825 - CaiB/BaiF CoA-transferase family protein, at 2,293,104 to 2,294,312 _RS10825 ABZR87_RS10830: ABZR87_RS10830 - ABC transporter substrate-binding protein, at 2,294,402 to 2,295,451 _RS10830 ABZR87_RS10835: ABZR87_RS10835 - ABC transporter ATP-binding protein, at 2,295,516 to 2,296,328 _RS10835 ABZR87_RS10840: ABZR87_RS10840 - ABC transporter permease, at 2,296,352 to 2,297,143 _RS10840 Position (kb) 2294 2295 2296Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2293.555 kb on - strand, within ABZR87_RS10825at 2293.555 kb on - strand, within ABZR87_RS10825at 2293.656 kb on + strand, within ABZR87_RS10825at 2293.656 kb on + strand, within ABZR87_RS10825at 2293.656 kb on + strand, within ABZR87_RS10825at 2293.657 kb on - strand, within ABZR87_RS10825at 2293.657 kb on - strand, within ABZR87_RS10825at 2293.657 kb on - strand, within ABZR87_RS10825at 2293.657 kb on - strand, within ABZR87_RS10825at 2293.657 kb on - strand, within ABZR87_RS10825at 2293.657 kb on - strand, within ABZR87_RS10825at 2293.707 kb on + strand, within ABZR87_RS10825at 2293.707 kb on + strand, within ABZR87_RS10825at 2293.708 kb on - strand, within ABZR87_RS10825at 2293.708 kb on - strand, within ABZR87_RS10825at 2293.708 kb on - strand, within ABZR87_RS10825at 2293.708 kb on - strand, within ABZR87_RS10825at 2293.708 kb on - strand, within ABZR87_RS10825at 2293.839 kb on + strand, within ABZR87_RS10825at 2293.839 kb on + strand, within ABZR87_RS10825at 2293.840 kb on - strand, within ABZR87_RS10825at 2294.058 kb on + strand, within ABZR87_RS10825at 2294.058 kb on + strand, within ABZR87_RS10825at 2294.058 kb on + strand, within ABZR87_RS10825at 2294.059 kb on - strand, within ABZR87_RS10825at 2294.059 kb on - strand, within ABZR87_RS10825at 2294.092 kb on - strand, within ABZR87_RS10825at 2294.310 kb on + strandat 2294.311 kb on - strandat 2294.359 kb on + strandat 2294.359 kb on + strandat 2294.553 kb on - strand, within ABZR87_RS10830at 2294.553 kb on - strand, within ABZR87_RS10830at 2294.694 kb on - strand, within ABZR87_RS10830at 2294.732 kb on + strand, within ABZR87_RS10830at 2294.732 kb on + strand, within ABZR87_RS10830at 2294.732 kb on + strand, within ABZR87_RS10830at 2294.732 kb on + strand, within ABZR87_RS10830at 2294.732 kb on + strand, within ABZR87_RS10830at 2294.733 kb on - strand, within ABZR87_RS10830at 2294.788 kb on + strand, within ABZR87_RS10830at 2294.789 kb on - strand, within ABZR87_RS10830at 2294.789 kb on - strand, within ABZR87_RS10830at 2294.789 kb on - strand, within ABZR87_RS10830at 2294.882 kb on + strand, within ABZR87_RS10830at 2294.882 kb on + strand, within ABZR87_RS10830at 2294.882 kb on + strand, within ABZR87_RS10830at 2294.883 kb on - strand, within ABZR87_RS10830at 2294.883 kb on - strand, within ABZR87_RS10830at 2294.883 kb on - strand, within ABZR87_RS10830at 2294.883 kb on - strand, within ABZR87_RS10830at 2294.964 kb on + strand, within ABZR87_RS10830at 2294.964 kb on + strand, within ABZR87_RS10830at 2294.965 kb on - strand, within ABZR87_RS10830at 2294.965 kb on - strand, within ABZR87_RS10830at 2294.965 kb on - strand, within ABZR87_RS10830at 2295.113 kb on + strand, within ABZR87_RS10830at 2295.114 kb on - strand, within ABZR87_RS10830at 2295.242 kb on + strand, within ABZR87_RS10830at 2295.243 kb on - strand, within ABZR87_RS10830at 2295.243 kb on - strand, within ABZR87_RS10830at 2295.266 kb on + strand, within ABZR87_RS10830at 2295.267 kb on - strand, within ABZR87_RS10830at 2295.412 kb on + strandat 2295.412 kb on + strandat 2295.413 kb on - strandat 2295.413 kb on - strandat 2295.416 kb on - strandat 2295.416 kb on - strandat 2295.416 kb on - strandat 2295.443 kb on + strandat 2295.449 kb on + strandat 2295.449 kb on + strandat 2295.449 kb on + strandat 2295.450 kb on - strandat 2295.450 kb on - strandat 2295.450 kb on - strandat 2295.450 kb on - strandat 2295.450 kb on - strandat 2295.450 kb on - strandat 2295.588 kb on + strandat 2295.589 kb on - strandat 2295.769 kb on - strand, within ABZR87_RS10835at 2295.769 kb on - strand, within ABZR87_RS10835at 2295.769 kb on - strand, within ABZR87_RS10835at 2295.769 kb on - strand, within ABZR87_RS10835at 2295.921 kb on + strand, within ABZR87_RS10835at 2296.302 kb on + strandat 2296.303 kb on - strandat 2296.303 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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2,293,555 - ABZR87_RS10825 0.37 -0.1
2,293,555 - ABZR87_RS10825 0.37 -1.8
2,293,656 + ABZR87_RS10825 0.46 -1.6
2,293,656 + ABZR87_RS10825 0.46 -0.2
2,293,656 + ABZR87_RS10825 0.46 +0.4
2,293,657 - ABZR87_RS10825 0.46 +1.2
2,293,657 - ABZR87_RS10825 0.46 +0.4
2,293,657 - ABZR87_RS10825 0.46 -1.3
2,293,657 - ABZR87_RS10825 0.46 +0.5
2,293,657 - ABZR87_RS10825 0.46 -0.1
2,293,657 - ABZR87_RS10825 0.46 -0.1
2,293,707 + ABZR87_RS10825 0.50 +0.1
2,293,707 + ABZR87_RS10825 0.50 +1.0
2,293,708 - ABZR87_RS10825 0.50 -0.9
2,293,708 - ABZR87_RS10825 0.50 +0.1
2,293,708 - ABZR87_RS10825 0.50 -0.2
2,293,708 - ABZR87_RS10825 0.50 -0.1
2,293,708 - ABZR87_RS10825 0.50 -0.2
2,293,839 + ABZR87_RS10825 0.61 +1.1
2,293,839 + ABZR87_RS10825 0.61 +0.1
2,293,840 - ABZR87_RS10825 0.61 +0.2
2,294,058 + ABZR87_RS10825 0.79 +0.7
2,294,058 + ABZR87_RS10825 0.79 +1.2
2,294,058 + ABZR87_RS10825 0.79 +1.1
2,294,059 - ABZR87_RS10825 0.79 +0.7
2,294,059 - ABZR87_RS10825 0.79 +0.9
2,294,092 - ABZR87_RS10825 0.82 +0.6
2,294,310 + +0.2
2,294,311 - -1.1
2,294,359 + +0.8
2,294,359 + +0.8
2,294,553 - ABZR87_RS10830 0.14 -1.6
2,294,553 - ABZR87_RS10830 0.14 -0.7
2,294,694 - ABZR87_RS10830 0.28 -0.2
2,294,732 + ABZR87_RS10830 0.31 +1.4
2,294,732 + ABZR87_RS10830 0.31 -0.2
2,294,732 + ABZR87_RS10830 0.31 -1.1
2,294,732 + ABZR87_RS10830 0.31 -0.1
2,294,732 + ABZR87_RS10830 0.31 +0.5
2,294,733 - ABZR87_RS10830 0.32 -3.0
2,294,788 + ABZR87_RS10830 0.37 +2.2
2,294,789 - ABZR87_RS10830 0.37 +0.6
2,294,789 - ABZR87_RS10830 0.37 -0.3
2,294,789 - ABZR87_RS10830 0.37 +1.4
2,294,882 + ABZR87_RS10830 0.46 +0.7
2,294,882 + ABZR87_RS10830 0.46 +0.1
2,294,882 + ABZR87_RS10830 0.46 -0.5
2,294,883 - ABZR87_RS10830 0.46 -0.1
2,294,883 - ABZR87_RS10830 0.46 +0.1
2,294,883 - ABZR87_RS10830 0.46 -1.1
2,294,883 - ABZR87_RS10830 0.46 -0.2
2,294,964 + ABZR87_RS10830 0.54 -1.1
2,294,964 + ABZR87_RS10830 0.54 -0.3
2,294,965 - ABZR87_RS10830 0.54 +0.0
2,294,965 - ABZR87_RS10830 0.54 +0.3
2,294,965 - ABZR87_RS10830 0.54 -0.3
2,295,113 + ABZR87_RS10830 0.68 -1.9
2,295,114 - ABZR87_RS10830 0.68 +0.3
2,295,242 + ABZR87_RS10830 0.80 -0.2
2,295,243 - ABZR87_RS10830 0.80 +0.9
2,295,243 - ABZR87_RS10830 0.80 -0.9
2,295,266 + ABZR87_RS10830 0.82 -0.6
2,295,267 - ABZR87_RS10830 0.82 +1.1
2,295,412 + +0.9
2,295,412 + +0.5
2,295,413 - -0.5
2,295,413 - +0.3
2,295,416 - +0.0
2,295,416 - -0.5
2,295,416 - -0.4
2,295,443 + +0.6
2,295,449 + -0.3
2,295,449 + +0.2
2,295,449 + -0.1
2,295,450 - -2.1
2,295,450 - +0.2
2,295,450 - -0.7
2,295,450 - +0.1
2,295,450 - -0.3
2,295,450 - -0.1
2,295,588 + +1.3
2,295,589 - -0.3
2,295,769 - ABZR87_RS10835 0.31 +1.2
2,295,769 - ABZR87_RS10835 0.31 -0.1
2,295,769 - ABZR87_RS10835 0.31 +1.1
2,295,769 - ABZR87_RS10835 0.31 +0.5
2,295,921 + ABZR87_RS10835 0.50 -0.4
2,296,302 + -0.5
2,296,303 - -0.1
2,296,303 - +0.3

Or see this region's nucleotide sequence