Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09525 and ABZR87_RS09530 are separated by 166 nucleotides ABZR87_RS09530 and ABZR87_RS09535 overlap by 11 nucleotides ABZR87_RS09535 and ABZR87_RS09540 are separated by 33 nucleotides
ABZR87_RS09525: ABZR87_RS09525 - histone deacetylase family protein, at 2,022,782 to 2,023,705
_RS09525
ABZR87_RS09530: ABZR87_RS09530 - methionine ABC transporter ATP-binding protein, at 2,023,872 to 2,024,921
_RS09530
ABZR87_RS09535: ABZR87_RS09535 - methionine ABC transporter permease, at 2,024,911 to 2,025,564
_RS09535
ABZR87_RS09540: ABZR87_RS09540 - MetQ/NlpA family ABC transporter substrate-binding protein, at 2,025,598 to 2,026,398
_RS09540
Position (kb)
2023
2024
2025 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2022.971 kb on + strand, within ABZR87_RS09525 at 2022.971 kb on + strand, within ABZR87_RS09525 at 2022.971 kb on + strand, within ABZR87_RS09525 at 2022.972 kb on - strand, within ABZR87_RS09525 at 2023.011 kb on - strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.232 kb on + strand, within ABZR87_RS09525 at 2023.233 kb on - strand, within ABZR87_RS09525 at 2023.233 kb on - strand, within ABZR87_RS09525 at 2023.303 kb on + strand, within ABZR87_RS09525 at 2023.352 kb on + strand, within ABZR87_RS09525 at 2023.352 kb on + strand, within ABZR87_RS09525 at 2023.352 kb on + strand, within ABZR87_RS09525 at 2023.352 kb on + strand, within ABZR87_RS09525 at 2023.353 kb on - strand, within ABZR87_RS09525 at 2023.353 kb on - strand, within ABZR87_RS09525 at 2023.353 kb on - strand, within ABZR87_RS09525 at 2023.353 kb on - strand, within ABZR87_RS09525 at 2023.358 kb on + strand, within ABZR87_RS09525 at 2023.359 kb on - strand, within ABZR87_RS09525 at 2023.413 kb on - strand, within ABZR87_RS09525 at 2023.413 kb on - strand, within ABZR87_RS09525 at 2023.563 kb on - strand, within ABZR87_RS09525 at 2023.563 kb on - strand, within ABZR87_RS09525 at 2023.563 kb on - strand, within ABZR87_RS09525 at 2023.643 kb on + strand at 2023.643 kb on + strand at 2023.643 kb on + strand at 2023.644 kb on - strand at 2023.644 kb on - strand at 2023.703 kb on + strand at 2023.704 kb on - strand at 2023.750 kb on - strand at 2023.762 kb on - strand at 2023.782 kb on + strand at 2023.782 kb on + strand at 2023.783 kb on - strand at 2023.794 kb on + strand at 2023.794 kb on + strand at 2023.794 kb on + strand at 2023.794 kb on + strand at 2023.794 kb on + strand at 2023.794 kb on + strand at 2023.795 kb on - strand at 2023.795 kb on - strand at 2023.795 kb on - strand at 2023.799 kb on + strand at 2023.800 kb on - strand at 2023.867 kb on + strand at 2023.867 kb on + strand at 2023.867 kb on + strand at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.082 kb on - strand, within ABZR87_RS09530 at 2024.172 kb on + strand, within ABZR87_RS09530 at 2024.172 kb on + strand, within ABZR87_RS09530 at 2024.172 kb on + strand, within ABZR87_RS09530 at 2024.754 kb on + strand, within ABZR87_RS09530 at 2024.754 kb on + strand, within ABZR87_RS09530 at 2024.755 kb on - strand, within ABZR87_RS09530 at 2024.786 kb on + strand, within ABZR87_RS09530 at 2025.025 kb on + strand, within ABZR87_RS09535 at 2025.026 kb on - strand, within ABZR87_RS09535 at 2025.026 kb on - strand, within ABZR87_RS09535 at 2025.313 kb on + strand, within ABZR87_RS09535 at 2025.313 kb on + strand, within ABZR87_RS09535 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.794 kb on - strand, within ABZR87_RS09540 at 2025.794 kb on - strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.859 kb on + strand, within ABZR87_RS09540
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 2,022,971 + ABZR87_RS09525 0.20 -0.3 2,022,971 + ABZR87_RS09525 0.20 -1.1 2,022,971 + ABZR87_RS09525 0.20 -1.4 2,022,972 - ABZR87_RS09525 0.21 -0.4 2,023,011 - ABZR87_RS09525 0.25 -1.9 2,023,048 + ABZR87_RS09525 0.29 -0.8 2,023,048 + ABZR87_RS09525 0.29 -1.7 2,023,048 + ABZR87_RS09525 0.29 -1.6 2,023,048 + ABZR87_RS09525 0.29 -0.6 2,023,048 + ABZR87_RS09525 0.29 -1.4 2,023,048 + ABZR87_RS09525 0.29 -1.7 2,023,049 - ABZR87_RS09525 0.29 -1.5 2,023,049 - ABZR87_RS09525 0.29 +0.1 2,023,049 - ABZR87_RS09525 0.29 -0.0 2,023,049 - ABZR87_RS09525 0.29 -1.2 2,023,049 - ABZR87_RS09525 0.29 +0.3 2,023,049 - ABZR87_RS09525 0.29 -2.1 2,023,049 - ABZR87_RS09525 0.29 -0.9 2,023,049 - ABZR87_RS09525 0.29 -0.1 2,023,052 + ABZR87_RS09525 0.29 -1.0 2,023,052 + ABZR87_RS09525 0.29 -2.9 2,023,052 + ABZR87_RS09525 0.29 -1.5 2,023,052 + ABZR87_RS09525 0.29 -1.0 2,023,052 + ABZR87_RS09525 0.29 -1.1 2,023,052 + ABZR87_RS09525 0.29 -1.9 2,023,052 + ABZR87_RS09525 0.29 -0.1 2,023,052 + ABZR87_RS09525 0.29 -1.3 2,023,052 + ABZR87_RS09525 0.29 +0.1 2,023,052 + ABZR87_RS09525 0.29 -1.4 2,023,052 + ABZR87_RS09525 0.29 -1.7 2,023,052 + ABZR87_RS09525 0.29 -2.0 2,023,052 + ABZR87_RS09525 0.29 -0.3 2,023,052 + ABZR87_RS09525 0.29 +0.1 2,023,052 + ABZR87_RS09525 0.29 -1.2 2,023,052 + ABZR87_RS09525 0.29 -1.0 2,023,052 + ABZR87_RS09525 0.29 -0.3 2,023,052 + ABZR87_RS09525 0.29 -1.0 2,023,052 + ABZR87_RS09525 0.29 -1.9 2,023,052 + ABZR87_RS09525 0.29 -1.9 2,023,053 - ABZR87_RS09525 0.29 -2.7 2,023,053 - ABZR87_RS09525 0.29 -1.5 2,023,053 - ABZR87_RS09525 0.29 +0.1 2,023,053 - ABZR87_RS09525 0.29 -1.9 2,023,053 - ABZR87_RS09525 0.29 -0.5 2,023,053 - ABZR87_RS09525 0.29 -1.9 2,023,053 - ABZR87_RS09525 0.29 -0.9 2,023,053 - ABZR87_RS09525 0.29 -0.7 2,023,053 - ABZR87_RS09525 0.29 -3.9 2,023,053 - ABZR87_RS09525 0.29 -0.6 2,023,053 - ABZR87_RS09525 0.29 -1.5 2,023,053 - ABZR87_RS09525 0.29 -1.1 2,023,053 - ABZR87_RS09525 0.29 -1.3 2,023,053 - ABZR87_RS09525 0.29 -1.2 2,023,053 - ABZR87_RS09525 0.29 -0.1 2,023,053 - ABZR87_RS09525 0.29 -2.6 2,023,053 - ABZR87_RS09525 0.29 -0.9 2,023,053 - ABZR87_RS09525 0.29 -1.2 2,023,232 + ABZR87_RS09525 0.49 +0.1 2,023,233 - ABZR87_RS09525 0.49 -2.0 2,023,233 - ABZR87_RS09525 0.49 -0.5 2,023,303 + ABZR87_RS09525 0.56 +0.3 2,023,352 + ABZR87_RS09525 0.62 -0.8 2,023,352 + ABZR87_RS09525 0.62 +1.4 2,023,352 + ABZR87_RS09525 0.62 -1.4 2,023,352 + ABZR87_RS09525 0.62 -4.0 2,023,353 - ABZR87_RS09525 0.62 -0.9 2,023,353 - ABZR87_RS09525 0.62 +0.2 2,023,353 - ABZR87_RS09525 0.62 -2.2 2,023,353 - ABZR87_RS09525 0.62 -1.7 2,023,358 + ABZR87_RS09525 0.62 -0.6 2,023,359 - ABZR87_RS09525 0.62 -2.4 2,023,413 - ABZR87_RS09525 0.68 -1.6 2,023,413 - ABZR87_RS09525 0.68 -1.2 2,023,563 - ABZR87_RS09525 0.85 -0.7 2,023,563 - ABZR87_RS09525 0.85 -2.2 2,023,563 - ABZR87_RS09525 0.85 -1.5 2,023,643 + -1.6 2,023,643 + -1.5 2,023,643 + -1.1 2,023,644 - -0.3 2,023,644 - -0.5 2,023,703 + +1.0 2,023,704 - +0.1 2,023,750 - +0.4 2,023,762 - +0.5 2,023,782 + -0.2 2,023,782 + -0.2 2,023,783 - -0.5 2,023,794 + +0.5 2,023,794 + -1.5 2,023,794 + -0.3 2,023,794 + -0.9 2,023,794 + -0.0 2,023,794 + -0.0 2,023,795 - -1.9 2,023,795 - +0.1 2,023,795 - +0.9 2,023,799 + -0.3 2,023,800 - +0.7 2,023,867 + +0.5 2,023,867 + -1.8 2,023,867 + -0.6 2,024,081 + ABZR87_RS09530 0.20 +0.1 2,024,081 + ABZR87_RS09530 0.20 -0.9 2,024,081 + ABZR87_RS09530 0.20 +0.3 2,024,081 + ABZR87_RS09530 0.20 +0.3 2,024,082 - ABZR87_RS09530 0.20 +0.6 2,024,172 + ABZR87_RS09530 0.29 +0.1 2,024,172 + ABZR87_RS09530 0.29 +0.3 2,024,172 + ABZR87_RS09530 0.29 -0.4 2,024,754 + ABZR87_RS09530 0.84 -0.6 2,024,754 + ABZR87_RS09530 0.84 -0.4 2,024,755 - ABZR87_RS09530 0.84 -2.2 2,024,786 + ABZR87_RS09530 0.87 -0.5 2,025,025 + ABZR87_RS09535 0.17 +1.1 2,025,026 - ABZR87_RS09535 0.18 +0.9 2,025,026 - ABZR87_RS09535 0.18 +0.6 2,025,313 + ABZR87_RS09535 0.61 -0.1 2,025,313 + ABZR87_RS09535 0.61 +0.0 2,025,793 + ABZR87_RS09540 0.24 -0.4 2,025,793 + ABZR87_RS09540 0.24 -1.6 2,025,793 + ABZR87_RS09540 0.24 +0.1 2,025,794 - ABZR87_RS09540 0.24 -0.4 2,025,794 - ABZR87_RS09540 0.24 -1.7 2,025,844 + ABZR87_RS09540 0.31 +0.2 2,025,844 + ABZR87_RS09540 0.31 -0.2 2,025,844 + ABZR87_RS09540 0.31 -0.0 2,025,844 + ABZR87_RS09540 0.31 +0.9 2,025,845 - ABZR87_RS09540 0.31 -0.1 2,025,845 - ABZR87_RS09540 0.31 -1.3 2,025,845 - ABZR87_RS09540 0.31 -0.4 2,025,845 - ABZR87_RS09540 0.31 +0.3 2,025,859 + ABZR87_RS09540 0.33 -1.5
Or see this region's nucleotide sequence